SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene22287

Length: 792 nt

Origin of reads: Biogeco_2 Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.2_unigene22287 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=2 Tax=Vitis vinifera RepID=A5AJT6_VITVI	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	fatty acid elongase	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	68%
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	68%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	68%
Blast2go	cuticle development	GO:0042335	Biological Process	68%
Blast2go	fatty acid elongation	GO:0030497	Biological Process	68%
Blast2go	response to light stimulus	GO:0009416	Biological Process	68%
Blast2go	protein binding	GO:0005515	Molecular Function	68%
Blast2go	fatty acid elongase activity	GO:0009922	Molecular Function	68%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Blast2go	FAE1/Type III polyketide synthase-like protein	IPR013601	-	68%
Blast2go	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	68%
Blast2go	Thiolase-like, subgroup	IPR016038	-	68%
Blast2go	Thiolase-like	IPR016039	-	68%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
498		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain