SustainPineDB

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene72

Length: 1880 nt

Origin of reads: Biogeco_2 Uagpf Uma Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.2_unigene72

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	splicing factor-like protein	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	68%
Blast2go	protein binding	GO:0005515	Molecular Function	68%
Blast2go	nuclear speck	GO:0016607	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	68%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTP2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 264 - 289

Fln protein: MQGYAFIYMEDERDAEDAIRGLDNTEFGRQRRRLTVEWTKHADRGLRRSEDGRRSLTGLKPTKTLFVINFDPHNTRIRDLENHFQPYGKVVNVRIRRNFAFVHFESQEEATKAFDSTHMSKLLDRVITVEYAQREDGNRRGGRSSPIRGGGRYGRYGEDRGRDRSASPIYGRRAMRGSPDYGRAPSPIYSRRPERRSPDYGRAPSPIYARRSERRSPDYARDASPVYGRRHQKDSPDYGRDASPNHIRERSRSPVRRSGPSII*

Protein Length: 265

Fln nts: CTTGAATGGTCCTGTCAGTTCATCCTGCTAAAACTATGTGTATCTGGAACAACCAGAAGAGGATTTCCCAGTTTAATTTTCTAAGCTGTGAAAGACCCTTGAAAGTCCGAATTATTCATGAATTATTGTTCTCAGAAGAGATAAGTGTTTTGGGTTCCAACATTGTAGGATTCCATGCCCATATCAACAATGTGCAAACTCGCCTTTGTATATCCAGTAACAAATTAATGTCCTTATTGGATGGGAATATCGACTATATAACAAAATGCAGGGACTCATTGTTAAAGATCCCTGGTGCCAGAGGACATCTCCGCAGCAAAAATCTAAATGAAACACAATATGTAAAGAATATTACTTTGATTTCAGATTTGGAAATCATGTTGAATGCATGGTTTTCAGTCTTCATTCTAGTTGGTAATGCGTAATGGTAACCTCTATGGTTCGTATCCAAGGTTACAAGCAAAGTTTAAGAAGCAACATTTTTGAAATGTAGGCCTCTGTACTTAAAAGTTTCTTTGGCGCAGGAATATTAAAGAGCGTACAAGCTCTTCCAGGAGATCCTGTGCATATATTCTTTCATCATGCTATGGATCAGCTTCTATAGCCTTGTTCAGCAAAGTTGATATACAAACGACATTTTGCATTTTTCTCATGACACTTACTTTTCATCCCTCCCATGCCATGCCATGTTAAGTCTTCAGCCAGGCTCAAGCATGTCAAGCGATAGAATTTCTGACACATTACTGCAATCGGAAAGGAGTATAACTGGTGAAGGCATTTACCTGATCGATGACCCTACAGCCATTTACCGCCACTTACAGCCATTTACCGCCACTTACAGTCACTTACCCGAGACCATTTAGTACATC_-_ATGCAAGGTTATGCTTTCATCTACATGGAAGATGAACGTGATGCTGAGGATGCCATCCGAGGGCTTGACAATACTGAATTTGGCAGGCAAAGACGTCGGCTAACTGTAGAGTGGACAAAGCATGCTGACCGTGGCCTTCGCCGGTCTGAAGATGGCAGAAGATCGCTTACAGGTTTGAAGCCAACTAAGACATTATTTGTGATAAACTTTGATCCACACAACACCAGAATCAGGGACCTTGAAAATCATTTTCAGCCCTATGGCAAAGTGGTGAATGTAAGGATTAGAAGGAATTTTGCATTTGTTCATTTTGAATCACAAGAAGAGGCGACTAAAGCTTTCGACTCCACCCATATGAGCAAATTATTAGATAGGGTGATCACAGTGGAATATGCCCAACGTGAGGATGGTAATAGAAGAGGTGGACGTTCCAGTCCCATTCGAGGAGGAGGTCGTTATGGCAGATATGGTGAGGATCGTGGCCGTGATCGATCTGCAAGTCCTATATATGGTAGACGTGCAATGAGGGGCAGTCCTGACTATGGTAGGGCTCCAAGTCCTATTTATTCAAGGCGTCCAGAGAGGCGCAGTCCTGACTACGGTAGGGCTCCAAGTCCTATCTATGCAAGGCGTTCAGAGAGGCGCAGTCCTGATTATGCCAGGGATGCAAGTCCTGTTTATGGCAGACGACATCAGAAGGATAGTCCAGATTATGGCAGAGATGCAAGCCCTAATCATATACGGGAACGCAGTCGATCACCAGTGAGGCGGTCGGGGCCTTCAATTATTTAGAATCATTCTTGAAGTCCGTCTACCCATAGGCAGTGAAGACATGGTCCAGAAATAATCCAATGGAATATTTTTGTAAACTGTATGTTGTTATTTGGCTGCTAAGGCTGATCCAGCCCTGGGAATATTTTTTAAAGCAGTTTTTAGGAATCGATCCCTCAGTTTGTTATTTAACTTGTAAATTACTGTTCTTGCTGTTAATTTTTACGAACTCCGTGACTA

Fln Alignment:

sp_v1.2_unigene72___GYAFIYMEDERDAEDAIRGLDNTEFGRQRRRLTVEWTKHADRGLRRSEDGRRSLTGLKPTKTLFVINFDPHNTRIRDLENHFQPYGKVVNVRIRRNFAFVHFESQEEATKAFDSTHMSKLLDRVITVEYAQREDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASPIYGRRAMRGSPDYGRAPSPIYSRRPERRSPDYGRAPSPIYARRSERRSPDYARDASPVYGRRHQKDSPDYGRDASP
A9NTP2____________GYAFVYMEDERDAEDAIRALDKTEFGRQRRRLTVEWTKHAERGLRRSEDGRRSVTGLKPTKTLFVINFDPYDTRARDLERHFEPYGKVLNVRIRRNFAFIHYGTQEEATKAFDATHMSTLLDRVITVEYAQRED-GNRRGGPSSPIRGGRYGRSSEDHGRDRSASPIYGRRAMRGSPDYGRAPSPTYARRPERCSPDYGRATSPIYSRRPEKHGSDYGRAASPVYASRPQKNSLDYGRDASP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1854		40		60	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
675	689	CCATG CCATG CCATG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain