SustainPineDB

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene49

Length: 2026 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.2_unigene49
ATGGGGGCTTCTTGGGTGAGAAAAATAAACTTCACCGATGATCTATTGAGTAGCAAGTACCTCTCGCGTGTCCTTTAGGGATCGAAGGGTTTTCATGATCCTTCAAGTTTTTCAAATGATGTCGGTCGTTGGATTAGGTTATAAATAACAAATCCCGTTTGTACTTATGAGATCTCGCCTTTGTGTTTCTGGCGCAACCGAACGTCGGGTGTCGAGTAACAATAAGAAAAAGGGAAGGCGCTGGAGGTTACACAGTACGAAGTTTGAGTCCACAGGGTGTGAAGCCGTCCGCTCACTCCACAAGTTGGAAGGAATTCCAACTGTAATCGGCTCCATCACAGGTTGTGGAAGTGCTGATAATCTGTGAAAGTCTGAATCTAGTAGCTATTTGAAGCCATGGCAGAACATTTAGCTTCAATCTTTGGTACTGAGAAAGATAGAGTAAATTGCCCTTTCTACTTCAAAATTGGGGTTTGCAGGCATGGGGATCGCTGTTCACGACTTCACACAAGGCCTAGTATCAGCCCTACACTTCTTCTATCTAACATGTATCAAAGGCCAGATATGATTACTCCAGGGATGGATCCTCAAGGTCATGCTCTGGACCCTCGAAAGATCCAGGAACACTTTGAGGATTTCTATGAAGATTTATTTGAAGAGCTCGGCAAGTATGGAGCAATAGAAAGCTTGAATGTTTGTGACAACTTGGCTGATCATATGGTTGGCAATGTTTATGTACAGTTCAGGGAGGAAGAACATGCTGCTGCTGCATTGCAGGCTTTGACTGGTAGATTTTATGCTGAGCGAGCAATCATAGTGGATTTCTCTCCTGTTACTGACTTCCGCGAAGCAACATGTAGGCAATATGAAGAGAATACTTGCAACCGTGGTGGCTACTGTAACTTTATGCACCTCAAGAAGATCAGCAGAGAGCTGAGGCGGCAATTATTTGGAAGGTATAGACAATATGGCCATGGTTACAGTAGAAGCCAGAGTCGAAGTCCTAGCCCTCGACTGTCTGTAGAAAGACACCGTGGTTATGATGATCGTCCTCGTGGTGGCCGTGGTTATGATGACCGTCCCTATGGTGGTCGTGGCTATGATAACCGTTCCCATGGTGGTCGTGGTTTTGGCAGGAGAAATGGGAGGGGTTATCCTAGTTATCATGATGATAGACATGGACGAAGGCCACGGAGCCGCAGTCCAGGTTACAGACGAGGTCGGAGCAGGAGCAGGAGCCACAGCCCTAGGAGGAGCAGAAATTTTGTGAGAGAAGGCAGTGCTGAGAGGAGAGCTAAAATTGAACAGTGGAATAAAGAAAGAGAACAAGCAGCAGCATCTTCCACTGCGAACCAGTCCATCCAAAATGGAGGGGTGTATTCGGATCAACCTGACGACGGCTTTTAGCTTATGGATGATTACTGCATTTTTGGTGCATGTGCTGCTGCTTCAATGTTACTGGTGTATGGAGTTTTCGAAATTTCTGGAGATGCTAAAGCTGTTTGTGCAGGAAGAAAATTATGGAGACTGCAATGGTCTCCATTATGCAGGGAGAAAGGAAGGCTACATGACTCTGTTTCAGGTTCATCTTGTGCAGGCACAGGTCTTTTGTCTAAAAAATTAGAGCTATATTATTTGTGCGGGCACTCTGGATTTTGAACCGTGGTTCTTTATAAAAGGTGTTTTGCAGGTACATGGTTTAAAATGGTTCTAGATTTGATGGTAACAGATCTAACAGTATTCAGTGGCTGGATTCTCTATATTTGGAATTTAAGTACCTGTATTCTTCAGGATTTATTTTGATACAGAATTGAATGGTAACGGATCTAACAGTATGCAGTGGTTGGATTCTCTTTGTTTGGAAGTTATATATCTGTATTCTTCAGGATTTAATTTTATACAGACCTCTCATATTCTGTTGTGGAATATATTTCTTAGCTAGAATTGATGTTTTGTACAGCATACAATTTCCGTGATTGATTATTTGCAATACCATACCTTTCTTGTTATGTTTAGAATGGTAGAT

Ace file of the UniGene sp_v1.2_unigene49

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	u2 snrnp auxiliary small	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	92%
Blast2go	binding	GO:0005488	Molecular Function	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	92%
Blast2go	Zinc finger, CCCH-type	IPR000571	-	92%
Blast2go	RNA recognition motif domain, eukaryote	IPR003954	-	92%
Blast2go	U2 auxiliary factor small subunit	IPR009145	-	92%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABW9

Fln msg:

Fln protein: MAEHLASIFGTEKDRVNCPFYFKIGVCRHGDRCSRLHTRPSISPTLLLSNMYQRPDMITPGMDPQGHALDPRKIQEHFEDFYEDLFEELGKYGAIESLNVCDNLADHMVGNVYVQFREEEHAAAALQALTGRFYAERAIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISRELRRQLFGRYRQYGHGYSRSQSRSPSPRLSVERHRGYDDRPRGGRGYDDRPYGGRGYDNRSHGGRGFGRRNGRGYPSYHDDRHGRRPRSRSPGYRRGRSRSRSHSPRRSRNFVREGSAERRAKIEQWNKEREQAAASSTANQSIQNGGVYSDQPDDGF*

Protein Length: 338

Fln nts: ATGGGGGCTTCTTGGGTGAGAAAAATAAACTTCACCGATGATCTATTGAGTAGCAAGTACCTCTCGCGTGTCCTTTAGGGATCGAAGGGTTTTCATGATCCTTCAAGTTTTTCAAATGATGTCGGTCGTTGGATTAGGTTATAAATAACAAATCCCGTTTGTACTTATGAGATCTCGCCTTTGTGTTTCTGGCGCAACCGAACGTCGGGTGTCGAGTAACAATAAGAAAAAGGGAAGGCGCTGGAGGTTACACAGTACGAAGTTTGAGTCCACAGGGTGTGAAGCCGTCCGCTCACTCCACAAGTTGGAAGGAATTCCAACTGTAATCGGCTCCATCACAGGTTGTGGAAGTGCTGATAATCTGTGAAAGTCTGAATCTAGTAGCTATTTGAAGCC_-_ATGGCAGAACATTTAGCTTCAATCTTTGGTACTGAGAAAGATAGAGTAAATTGCCCTTTCTACTTCAAAATTGGGGTTTGCAGGCATGGGGATCGCTGTTCACGACTTCACACAAGGCCTAGTATCAGCCCTACACTTCTTCTATCTAACATGTATCAAAGGCCAGATATGATTACTCCAGGGATGGATCCTCAAGGTCATGCTCTGGACCCTCGAAAGATCCAGGAACACTTTGAGGATTTCTATGAAGATTTATTTGAAGAGCTCGGCAAGTATGGAGCAATAGAAAGCTTGAATGTTTGTGACAACTTGGCTGATCATATGGTTGGCAATGTTTATGTACAGTTCAGGGAGGAAGAACATGCTGCTGCTGCATTGCAGGCTTTGACTGGTAGATTTTATGCTGAGCGAGCAATCATAGTGGATTTCTCTCCTGTTACTGACTTCCGCGAAGCAACATGTAGGCAATATGAAGAGAATACTTGCAACCGTGGTGGCTACTGTAACTTTATGCACCTCAAGAAGATCAGCAGAGAGCTGAGGCGGCAATTATTTGGAAGGTATAGACAATATGGCCATGGTTACAGTAGAAGCCAGAGTCGAAGTCCTAGCCCTCGACTGTCTGTAGAAAGACACCGTGGTTATGATGATCGTCCTCGTGGTGGCCGTGGTTATGATGACCGTCCCTATGGTGGTCGTGGCTATGATAACCGTTCCCATGGTGGTCGTGGTTTTGGCAGGAGAAATGGGAGGGGTTATCCTAGTTATCATGATGATAGACATGGACGAAGGCCACGGAGCCGCAGTCCAGGTTACAGACGAGGTCGGAGCAGGAGCAGGAGCCACAGCCCTAGGAGGAGCAGAAATTTTGTGAGAGAAGGCAGTGCTGAGAGGAGAGCTAAAATTGAACAGTGGAATAAAGAAAGAGAACAAGCAGCAGCATCTTCCACTGCGAACCAGTCCATCCAAAATGGAGGGGTGTATTCGGATCAACCTGACGACGGCTTTTAG___CTTATGGATGATTACTGCATTTTTGGTGCATGTGCTGCTGCTTCAATGTTACTGGTGTATGGAGTTTTCGAAATTTCTGGAGATGCTAAAGCTGTTTGTGCAGGAAGAAAATTATGGAGACTGCAATGGTCTCCATTATGCAGGGAGAAAGGAAGGCTACATGACTCTGTTTCAGGTTCATCTTGTGCAGGCACAGGTCTTTTGTCTAAAAAATTAGAGCTATATTATTTGTGCGGGCACTCTGGATTTTGAACCGTGGTTCTTTATAAAAGGTGTTTTGCAGGTACATGGTTTAAAATGGTTCTAGATTTGATGGTAACAGATCTAACAGTATTCAGTGGCTGGATTCTCTATATTTGGAATTTAAGTACCTGTATTCTTCAGGATTTATTTTGATACAGAATTGAATGGTAACGGATCTAACAGTATGCAGTGGTTGGATTCTCTTTGTTTGGAAGTTATATATCTGTATTCTTCAGGATTTAATTTTATACAGACCTCTCATATTCTGTTGTGGAATATATTTCTTAGCTAGAATTGATGTTTTGTACAGCATACAATTTCCGTGATTGATTATTTGCAATACCATACCTTTCTTGTTATGTTTAGAATGGTAGAT

Fln Alignment:

sp_v1.2_unigene49___MAEHLASIFGTEKDRVNCPFYFKIGVCRHGDRCSRLHTRPSISPTLLLSNMYQRPDMITPGMDPQGHALDPRKIQXXXXXXXXXXXXXXGKYGAIESLNVCDNLADHMVGNVYVQFREEEHXXXXXXXXTGRFYAERAIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISRELRRQLFGRYRQYGHGYXXXXXXXXXXXXXVERHXXXXXXXXXXXXXXXXXXXXXXXXNRSHXXXXXXXXXXXXYPSYHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFVREGSAERRAKIEQWNKEREQAAASSTANQSIQNGGVYSDQPDDGF
D5ABW9____________MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTRPSISPTILLSNMYQRPDMITPGMDPQGHALDPQKIQEHFEDFYEDLFEELGKYGEIESLNVCDNLADHMVGNVYVQFREEEHAAAALQALTGRFYAGRAIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISRELRRQLFGRYRRYGHGYSRSRSRSLSPGLSVERHRGYDDRPRGGRGYDDRPYGGRGYDDRPHGGRGFGRKNERDYPGYHDDRHGRRPRSRSPGHRQGRSRSHSPKRNRSP--VREGSAERRAKIEQWNREREQAAASSDANQSMQNGGAHSYQPGYGY

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
257		16	83		0.999991
395	92			8	0.999718
1409		10	90		0.90298
1410		90		10	0.90298
1411			10	90	0.90298
1412		10		90	0.90298
1415			90	10	0.90298
1416			90	10	0.90298
1417	90			10	0.90298
1420	87		12		0.992554
1437		75	25		1.0
1438	75	25			1.0
1439	25	75			1.0
1442		71		28	1.0
1443	60		40		1.0
1444		50		50	1.0
1446			50	50	1.0
1447		50		50	1.0
1450		50	50		1.0
1452			25	50	1.0
1524		10		90	0.90298
1525		50	50		1.0
1526			90	10	0.90298
1527	50			50	1.0
1529	90		10		0.90298
1532			90	10	0.90298
1534	63			18	0.999997
1535	63	9	9		0.999997
1537	27		63		1.0
1538		27	63		1.0
1539	27			72	1.0
1747			95	4	0.997218
1908	11	88			0.923564
1926	14		85		0.993533
1943		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
759	770	TGC TGC TGC TGC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain