SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene25

Length: 331 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.2_unigene25
ATGGGGATCTCGATGTAAAAGAAAAGATTTTTGATCGTCACAGAATCCGACTGGACTCATACATCGAGTTTGGCTGGCCTTCCTTCCTTCCTGCATACGACTGTGAAAGAGCCTGGGAGGGAGGTTCTGTCTGAGAGAAGAAGATGGATTTGAACTTGGCGAGCCATGGAGAAGAAGAAGAAGGGGTAAGGCGTCGGAAAGTAGGAATTGTATACGACGAACGAATGTGCAAGCATGCTACTCCTGAGGATCAACCACATCCCGAACAACCAGATCGCATTAAGGTGATATGGGACAAGCTCAACTCCGCCGGGGTCCTCCATAAATGTGT

Ace file of the UniGene sp_v1.2_unigene25

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histone deacetylase 5 [Arabidopsis thaliana] sp\|Q8RX28.1\|HDA5_ARATH RecName: Full=Histone deacetylase 5 gb\|AAM13986.1\| putative histone deacetylase [Arabidopsis thaliana] gb\|AAM53342.1\| histone deacetylase-like protein [Arabidopsis thaliana] gb\|AAN15392.1	-	-	1.0e-08	64%
FL-Next	sp=Histone deacetylase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	histone deacetylase 5	-	-	1.74598e-08	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.74598e-08	76%
Blast2go	nucleus	GO:0005634	Cellular Component	1.74598e-08	76%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q8RX28

Fln msg: Distance to subject end: 590 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 62 - 660

Fln protein: MDLNLASHGEEEEGVRRRKVGIVYDERMCKHATPEDQPHPEQPDRIKVIWDKLNSAGVLHKC

Protein Length: 63

Fln nts: ATGGGGATCTCGATGTAAAAGAAAAGATTTTTGATCGTCACAGAATCCGACTGGACTCATACATCGAGTTTGGCTGGCCTTCCTTCCTTCCTGCATACGACTGTGAAAGAGCCTGGGAGGGAGGTTCTGTCTGAGAGAAGAAG_-_ATGGATTTGAACTTGGCGAGCCATGGAGAAGAAGAAGAAGGGGTAAGGCGTCGGAAAGTAGGAATTGTATACGACGAACGAATGTGCAAGCATGCTACTCCTGAGGATCAACCACATCCCGAACAACCAGATCGCATTAAGGTGATATGGGACAAGCTCAACTCCGCCGGGGTCCTCCATAAATGTGT

Fln Alignment:

sp_v1.2_unigene25___YDERMCKHATPEDQPHPEQPDRIKVIWDKLNSAGVLHKC
Q8RX28____________YDETMCKHDTPDGEDHPECPDRIRVIWEKLQLAGVSQRC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
162		50		50	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
78	92	CCTT CCTT CCTT CCT	15
170	183	AGA AGA AGA AGA AG	14

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain