SustainPineDB

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene26428

Length: 1628 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.2_unigene26428

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF221 domain containing protein	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	early-responsive to dehydration expressed	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF221	IPR003864	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Misassembled

Fln database: coniferopsida.fasta

Fln subject: B8LKM0

Fln msg: Coding sequence with some errors, ERROR#1, contains sense and antisense hits!!!, putative chimeric sequence,

Fln nts: AGGTGTTGAATGTCCCTCCTGAGATTGAGGAGACCGTCCACTGAAAGATGTAGGTTCAAGAATCGGTATGGGGGCTACAGGTCCCTCATCGGGAGAGTCATCAATTATAATGACTTCATGAACAGATTGGGAACCAGCAGAAGACGGAGGTTTCTTTTTTGCTTGAAAATTTGCACCGACAGGCTTGTATGACATTTCCTTTTCCATTGATGTCGATGGAATGTGTGATAATGTATATTTTATTGTTGGGCTTGTAAAACCTAATTGACTCCCAGCAGGACCTATATTTACCGAGTTGGCACCAGCTGATGATTGGCAAGGTGAAACTGATAATCTTCTTAGCCAAACATCAGAAATATTCCCTGCAGCCGTTGGAGGTTGATAGCAGTAACCCCCTAAAGATCTTGAATCTCGTCTTCTTAGACTTTCGGGAGCGTGGAGATTATTCTGATCAAAGGTAATAGAACTTTCTAGAGGTTGATTAAGATAACTGTTCCCATCTTGCCAAAAGTTTTCCTCAGATGTGAATCCTAGAAGCCTGAGGTAGTTTGCATTTGGTGAAAAAGAGCTGGACTGTCTCACTCAAGCTACGTTCATCTGTAAATGGGATGCCACGAACAAGAACAGTGAATTGATTGGGCTGAGGCTGAG_-_ATGCTTCAAAATGGCCAGCTCTTTTCACTCAGTATCATCCTTTGACTTATCATTCACATCAGATGATTTATCGAACTGGCAGAGTGCAGGCACTTATGCAAGATGCGGAAAAGCTGTATAAAAAGATTGTGCACTTGAAACATAATCATCTCTGTCAAACACAGTCCCAGAGAGAAGGCTCCTTTTGTCTTTGTTGTGCAAAGATAGATCCTGTGAATCTATACACAAAGAAGCTTGAGAATGTCGAGCGGAAGGCTAGGAATGGGCATTCGGAATATTTTATAGAAGCCAAGGAACTTCCAGCTGCCTTTGTTTCCTTTAAGTCACGATATGGTGCAGCAGTTGCTGCACAGGTTCGGCAGTCATCCAATCCCATGTTGTGGGTGACAGAGCCGGCACCAGAACCAAATGATGTTCATTGGTCAAACCTTTCTATAGCACCCAGACAGCTATGGTTCCGTAAAATTGTGATTCTTTTGGGAAGTGTTAGCCTTACAATCTCGTTTTTCATTCCTGTCACATTTGTACAGGGTCTTTCACAGCTGGACAAGTTACAGCGATATTTTCCATTCCTAAGAAAAGTGCTGAGAACGACATTTGCAAGTCAAATCATCACTGGCTACCTTCCTAGTGTTATTCTCCAGTTATTTCTTTATGTTGTTCCACCCATAATGATGCTGTTTTCAGCCATCCAAGGTTCAGTTTCATATGGTGGAAGGCAAAAGAGTGCATGTGCCAAAATGCTCTACTTCACAGTTTGGAATGTGTTTTTTGTGAATGTTTTATCTGGAACGGTCATCAACCAACTCAATAACATCATTTCGAGCCCAAAAAACTTACCCAGGCAGCTTGCAAAAGCAGTTCCTAGACAGGCAACTTTCTTCATCACTTATATTTTGACATCAGGATGGGCAAGTGTATCATCAGAACTTATACAACTATTCTCTCTGATTTGGAATGTTTATAAACGTTGTTTC

Fln Alignment:

Contig26428___FTQYHPLTYHSHQMIYRTGRVQALMQDAEKLYKKIVHLKHNHLCQTQSQREGSFCLCCAKIDPVNLYTKKLENVERKARNGHSEYFIEAKELPAAFVSFKSRYGAAVAAQVRQSSNPMLWVTEPAPEPNDVHWSNLSIAPRQLWFRKIVILLGSVSLTISFFIPVTFVQGLSQLDKLQRYFPFLRKVLRTTFASQIITGYLPSVILQLFLYVVPPIMMLFSAIQGSVSYGGRQKSACAKMLYFTVWNVFFVNVLSGTVINQLNNIISSPKNLPRQLAKAVPRQATFFITYILTSGWASVSSELIQLFSLIWNVYKRCF
B8LKM0_______________FTLYHPSTYFSHQMVYHSNRVQSLMHEAEKLYKRILHLKTKPRLQRKSHREGFLGLFGAKVDPVDLYTKKLEDVEENVKLEQSTFYQNEKELPAAFVSFRSRYGAAMASQLVQSSNPLLWVTEPAPEPSDIYWPFLSAPYIQLWISKFVVVVAVFFLTILFLVPVTFVQGLTQLTELESFLPFLKKVLKLTIVSDIITGYLPSLILQMFQYFVPPIMLLFSAMRGHISNSGKMKSACIMVLSFTIWNVFFATVLSGSVISQINTFLSDPKDIPRQLAVVVPGQATFFITYVLTSGWTGLSLEIARIFPLIGNFFIRHF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain