SustainPineDB

Assembly Name: SustainPine v1.2

UniGene Name: sp_v1.2_unigene11

Length: 1510 nt

Origin of reads: Biogeco_2 Uma Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.2_unigene11

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SPI2 protein n=1 Tax=Picea abies RepID=Q9SC55_PICAB	-	-	84%
FL-Next	tr=SPI2 protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	84%
Blast2go	peroxidase 72	-	-	78%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	78%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	78%
Blast2go	Haem peroxidase	IPR010255	-	78%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	78%
Blast2go	Peroxidase, active site	IPR019794	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9SC55

Fln msg:

Fln protein: MAATSGLRLQFRSVLITGLALMLWLQALHAQSSNGLSPNYYDKSCPEALSIIKSGVEDAVKQEARMAASLLRLHFHDCFVKGCDASLLLDDTANFTGEKTAKPNLNSVRGFGVVDKIKRALEKKCPGVVSCADLLAVAARDSVIISGGPAWEVPLGRRDSRSASKSGANYNIPAPTSTHQTLETKFKLKGLHSLDLVVLSGGHTIGLSRCTSFKARLYNNSGSGKPDPTLDTTYLKQLRIECPQNGTDDNQTVPLDPVTPFKFDVNYYKNIVASKGLLNSDEILYSTNGSKTAAYVKFYTTHTQAFFKQFALSMIKMGNLSPLTGSLGEIRKNCRKMN*

Protein Length: 340

Fln nts: ATGGGGAGAATGTAAAGTTCTAGTCTTTTGCATCGTCCGGAAACAGTAGAGGTTTGCTTTAGCTTTCACTGTA_-_ATGGCAGCGACTTCTGGCCTTAGACTGCAGTTTCGCTCTGTGCTTATCACGGGACTGGCACTGATGCTATGGCTCCAGGCATTACATGCTCAAAGCTCTAATGGTTTGAGTCCCAACTATTATGACAAATCCTGTCCCGAGGCCTTGTCTATCATTAAATCTGGTGTAGAAGATGCTGTGAAACAGGAAGCAAGAATGGCTGCTTCTTTGCTTCGTCTGCATTTTCATGACTGCTTTGTTAAGGGTTGCGATGCTTCGCTTCTGCTTGATGACACTGCCAACTTCACGGGGGAAAAGACAGCAAAACCTAACCTGAATTCGGTCAGAGGGTTTGGAGTGGTGGATAAGATCAAAAGAGCACTGGAGAAAAAATGCCCCGGAGTGGTGTCATGTGCTGATCTTCTTGCTGTAGCAGCCCGCGACTCTGTAATCATCAGTGGAGGACCTGCTTGGGAGGTTCCATTGGGCAGAAGGGACTCCAGAAGTGCAAGCAAGAGCGGTGCAAACTACAACATTCCTGCCCCCACATCAACCCATCAGACACTAGAAACCAAATTCAAACTCAAAGGCCTCCATTCACTTGACCTGGTTGTTCTATCAGGGGGTCATACAATAGGTTTATCGCGATGCACAAGCTTCAAGGCAAGGCTGTACAATAATAGTGGTAGTGGGAAACCTGACCCAACATTGGACACCACGTACTTGAAGCAGCTGAGAATCGAGTGTCCCCAAAATGGCACCGACGACAATCAAACTGTACCGTTGGATCCGGTCACTCCTTTTAAGTTCGACGTAAACTACTACAAGAACATTGTGGCCAGTAAAGGGTTGCTCAATTCAGATGAGATTCTTTATTCCACCAATGGAAGTAAAACAGCAGCTTATGTAAAATTCTACACAACCCACACCCAAGCTTTCTTCAAACAATTCGCTCTTTCAATGATAAAGATGGGCAACCTCAGTCCTCTCACCGGGTCCCTGGGAGAAATTAGGAAGAACTGTCGTAAAATGAATTGA___CCGAATTGTTTGGCCATGAATAAGTACCCGACAACAGATTAATAAATGTGATATATGTTGGGGGTATTTGGTTGGCTCTGAATGTCAGTTAATTTAAAAATTTCAACGAAAAGGCCCACCTCATTTGATCATGGATCAATTACGAGTGTGCCCACAGTGGATTTTCTCGGTGTTTCGTTTCATGATTGTTCTCCTTTCGTAACAGTAGTCGTGGAAGTATTCTAGCCGGTTATCGGTCACAAGTGTTTGAGACCCCTAGGGTACTCAACGCCCATTGGTCCAGTGTCGTTTTATTTTATAGGGTGTTTAGGAAATTCGAGGGCGTTAATGGGCGTTTGGAGTTATTAATTCGTTGTACAATCTCTATGGTTTATTCACAAATTCGCGTCAATAAAGTTTCTCGCCATTGTCAGCGTGAAC

Fln Alignment:

sp_v1.2_unigene11___MAATSGLRLQFRSVLITGLALMLWLQALHAQSSNGLSPNYYDKSCPEALSIIKSGVEDAVKQEARMAASLLRLHFHDCFVKGCDASLLLDDTANFTGEKTAKPNLNSVRGFGVVDKIKRALEKKCPGVVSCADLLAVAARDSVIISGGPAWEVPLGRRDSRSASKSGANYNIPAPTSTHQTLETKFKLKGLHSLDL-VVLSGGHTIGLSRCTSFKARLYNNSGSGKPDPTLDTTYLKQLRIECPQNGTDDNQTVPLDPVTPFKFDVNYYKNIVASKGLLNSDEILYSTNGSKTAAYVKFYTTHTQAFFKQFALSMIKMGNLSPLTGSLGEIRKNCRKMN
Q9SC55____________MARASGLRLQFRSVLIAGMALMIWIQALHAQSSNGLSPHYYHKSCPEALSIIKSGIEDAVKKEARIAASLLRLHFHDCFVKGCDASVLLDDTANFTGEKTAAPNKNSVRGFGVVDKIKSELEKKCPGVVSCADLLAVAARDSVVISGGPVWDVPLGRRDSRSASKNRATTNIPAPPQPIRHWKPNSNSKGSNSLGPGLVLSGGHSIGLSRCTSFKARLYNQTGNGKPDPTLDTTYLKQLRIVCPQNGTDDNQTVPLDPVTPFKFDVNYYKNIVASKGLLNSDEILYSTNGSKTAAYVKFYTTHTQAFFQQFAVSMIKMSNLSPLTGTRGEIRKNCRKMN

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
194		20		80	0.995493
466		11		88	0.923564
1288		16		83	0.994512
1293		83		16	0.994512
1335			75	25	1.0
1421	11		88		0.923564
1423		44		55	1.0
1427			55	44	1.0
1431	55		44		1.0
1458			62	37	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain