Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: copia-type polyprotein

Source: Description from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene4293 SustainPine v1.1 1320
AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SHL9_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
Putative Complete
sp_v1.1_unigene5706 SustainPine v1.1 908
AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE9_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
N-terminus
sp_v1.1_unigene6332 SustainPine v1.1 1344
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
C-terminus
sp_v1.1_unigene13908 SustainPine v1.1 799
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
Putative N-terminus
sp_v1.1_unigene13919 SustainPine v1.1 253
AutoFact: Copia-type polyprotein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 6.21571e-11
Internal
sp_v1.1_unigene14357 SustainPine v1.1 1254
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 8.0e-16
FL-Next: tr=Copia-type polyprotein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: copia-type polyprotein 1.50829e-17
Putative N-terminus
sp_v1.1_unigene20483 SustainPine v1.1 407
AutoFact: Polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3X6_SOLDE 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 1.83948e-15
Putative C-terminus
sp_v1.1_unigene21385 SustainPine v1.1 219
AutoFact: Integrase n=1 Tax=Boechera divaricarpa RepID=B6REL8_9BRAS 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 2.53525e-12
Internal
sp_v1.1_unigene22220 SustainPine v1.1 385
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 1.95636e-17
Internal
sp_v1.1_unigene25563 SustainPine v1.1 902
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
Putative C-terminus
sp_v1.1_unigene27012 SustainPine v1.1 488
AutoFact: Copia-type polyprotein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 5.56076e-28
Putative C-terminus
sp_v1.1_unigene28711 SustainPine v1.1 464
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 1.13546e-23
Internal
sp_v1.1_unigene29118 SustainPine v1.1 797
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 4.99983e-42
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: copia-type polyprotein 8.89965e-42
Putative C-terminus
sp_v1.1_unigene31525 SustainPine v1.1 538
AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
Internal
sp_v1.1_unigene32312 SustainPine v1.1 692
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 9.66896e-44
Internal
sp_v1.1_unigene33044 SustainPine v1.1 774
AutoFact: Copia-type polyprotein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 1.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 6.38527e-40
N-terminus
sp_v1.1_unigene33160 SustainPine v1.1 464
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 5.41514e-23
Internal
sp_v1.1_unigene33319 SustainPine v1.1 438
AutoFact: RVT_2 domain containing protein 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 3.75635e-37
Putative C-terminus
sp_v1.1_unigene34797 SustainPine v1.1 631
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 4.2039e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 7.00649e-45
Internal
sp_v1.1_unigene34803 SustainPine v1.1 707
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 2.0e-26
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: copia-type polyprotein 2.80384e-26
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain