Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene6080 SustainPine v1.1 1421
AutoFact: Serine/threonine-protein kinase AFC2 n=3 Tax=Arabidopsis RepID=AFC2_ARATH 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
Complete
sp_v1.1_unigene7039 SustainPine v1.1 2023
AutoFact: WD-repeat protein, putative (EC:2.3.1.48) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene8565 SustainPine v1.1 804
AutoFact: cleavage/polyadenylation factor ia subunit clp1p, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna cleavage complex ii protein clp1 0.0
Internal
sp_v1.1_unigene10150 SustainPine v1.1 1296
AutoFact: poly-A binding protein, putative 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly-a binding 0.0
C-terminus
sp_v1.1_unigene10314 SustainPine v1.1 955
AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v1.1_unigene11469 SustainPine v1.1 1940
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-rrna processing protein rrp5 0.0
Putative Complete
sp_v1.1_unigene11978 SustainPine v1.1 620
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_818.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TRX8_VITVI 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.21783e-34
Putative C-terminus
sp_v1.1_unigene12141 SustainPine v1.1 506
AutoFact: XPA-binding protein, putative; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: adapter protein ath-55 0.0
Internal
sp_v1.1_unigene12145 SustainPine v1.1 348
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene12250 SustainPine v1.1 598
AutoFact: transcription-coupled DNA repair protein-related; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene12714 SustainPine v1.1 1112
AutoFact: PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b 0.0
Putative Complete
sp_v1.1_unigene13023 SustainPine v1.1 998
AutoFact: WD-repeat protein, putative (EC:2.3.1.48) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene13326 SustainPine v1.1 2220
AutoFact: splicing factor, putative; K13091 RNA-binding protein 39 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 0.0
Complete
sp_v1.1_unigene14594 SustainPine v1.1 553
AutoFact: CAF1; CAF1; RNA splicing factor, transesterification mechanism 5.0e-30
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor 1 1.70395e-40
Internal
sp_v1.1_unigene15555 SustainPine v1.1 2050
AutoFact: polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polypyrimidine tract-binding heterogeneous nuclear 0.0
Complete
sp_v1.1_unigene16494 SustainPine v1.1 2640
AutoFact: Serine/threonine-protein kinase AFC2 n=3 Tax=Arabidopsis RepID=AFC2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
Complete
sp_v1.1_unigene16557 SustainPine v1.1 1044
AutoFact: Glycine rich protein-like n=4 Tax=Arabidopsis RepID=Q8LAC6_ARATH 8.00001e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine rich 7.00649e-45
Complete
sp_v1.1_unigene16719 SustainPine v1.1 1563
AutoFact: Os07g0631900 protein n=2 Tax=Oryza sativa RepID=Q8LHN4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribonucleoprotein a 0.0
Complete
sp_v1.1_unigene17193 SustainPine v1.1 224
AutoFact: PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: protein 6.37667e-32
Internal
sp_v1.1_unigene17355 SustainPine v1.1 650
AutoFact: splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; K12822 RNA-binding protein 25 6.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.99884e-39
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain