Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene3752 SustainPine v1.1 1441
AutoFact: transducin family protein / WD-40 repeat family protein; K13111 WD40 repeat-containing protein SMU1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: smu-1 suppressor of mec-8 and unc-52 homolog ( elegans) 0.0
Putative Complete
sp_v1.1_unigene3987 SustainPine v1.1 2133
AutoFact: Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO 0.0
FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: c2h2 zinc-finger protein 0.0
C-terminus
sp_v1.1_unigene10582 SustainPine v1.1 765
AutoFact: splicing factor-related; K13095 splicing factor 1 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 4.93494e-29
Internal
sp_v1.1_unigene10923 SustainPine v1.1 2518
AutoFact: red protein, putative; K13109 IK cytokine 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 0.0
Complete
sp_v1.1_unigene11244 SustainPine v1.1 915
AutoFact: splicing factor-related; K13095 splicing factor 1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene12141 SustainPine v1.1 506
AutoFact: XPA-binding protein, putative; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: adapter protein ath-55 0.0
Internal
sp_v1.1_unigene12482 SustainPine v1.1 763
AutoFact: zinc finger protein, putative; K13095 splicing factor 1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene13287 SustainPine v1.1 279
AutoFact: ESP3; ESP3 (ENHANCED SILENCING PHENOTYPE 3); ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding; K12813 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] 8.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna helicase 1.62188e-40
Internal
sp_v1.1_unigene14378 SustainPine v1.1 596
AutoFact: Maturase (Fragment) n=1 Tax=Pinus sp. Qiu 94013 RepID=Q9T671_9CONI 0.0
FL-Next: tr=MatR; Abies nephrolepis. Mitochondrion. 0.0
Blast2go: maturase 0.0
N-terminus
sp_v1.1_unigene14534 SustainPine v1.1 1880
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atrsp41 rna binding nucleic acid binding nucleotide binding 0.0
Putative Complete
sp_v1.1_unigene16557 SustainPine v1.1 1044
AutoFact: Glycine rich protein-like n=4 Tax=Arabidopsis RepID=Q8LAC6_ARATH 8.00001e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine rich 7.00649e-45
Complete
sp_v1.1_unigene17531 SustainPine v1.1 2968
AutoFact: protein binding protein, putative; K12821 pre-mRNA-processing factor 40 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein binding 0.0
Complete
sp_v1.1_unigene17935 SustainPine v1.1 451
AutoFact: WD-repeat protein, putative (EC:2.7.11.7); K13111 WD40 repeat-containing protein SMU1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
N-terminus
sp_v1.1_unigene18724 SustainPine v1.1 1472
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor at-srp40 0.0
Complete
sp_v1.1_unigene18928 SustainPine v1.1 1888
AutoFact: step II splicing factor slu7, putative; K12819 pre-mRNA-processing factor SLU7 0.0
FL-Next: sp=Pre-mRNA-splicing factor SLU7; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene21712 SustainPine v1.1 615
AutoFact: RSZ32; zinc knuckle (CCHC-type) family protein 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: arginine serine-rich splicing 5.13861e-16
Complete
sp_v1.1_unigene22801 SustainPine v1.1 1045
AutoFact: Thioredoxin-like protein 4A n=45 Tax=Coelomata RepID=TXN4A_HUMAN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: thioredoxin-like 4a 0.0
Complete
sp_v1.1_unigene28427 SustainPine v1.1 552
AutoFact: SE (SERRATE); DNA binding / transcription factor [Arabidopsis thaliana] sp|Q9ZVD0.2|SRRT_ARATH RecName: Full=Serrate RNA effector molecule gb|AAK63206.1|AF311221_1 C2H2 zinc-finger protein SERRATE [Arabidopsis thaliana] gb|AAL16137.1|AF428305_1 At2g27100/ 0.0
FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: c2h2 zinc-finger protein 0.0
Internal
sp_v1.1_unigene31939 SustainPine v1.1 411
AutoFact: WD-repeat protein, putative (EC:2.7.11.7); K13111 WD40 repeat-containing protein SMU1 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
Internal
sp_v1.1_unigene37043 SustainPine v1.1 416
AutoFact: WD-repeat protein, putative (EC:2.7.11.7); K13111 WD40 repeat-containing protein SMU1 4.0e-24
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: wd40 repeat-containing protein smu1 1.74249e-24
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain