Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: production of ta-siRNAs involved in RNA interference

Term: GO:0010267  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene1680 SustainPine v1.1 1817
• AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v1.1_unigene3784 SustainPine v1.1 1905
• AutoFact: Ribonuclease III, putative (EC:3.1.26.3); K11592 endoribonuclease Dicer [EC:3.1.26.-] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 0.0
C-terminus
sp_v1.1_unigene3987 SustainPine v1.1 2133
• AutoFact: Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO 0.0
• FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: c2h2 zinc-finger protein 0.0
C-terminus
sp_v1.1_unigene4925 SustainPine v1.1 715
• AutoFact: RNA-dependent RNA polymerase 6 n=5 Tax=Nicotiana RepID=A9CRC9_TOBAC 0.0
• FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
Internal
sp_v1.1_unigene5476 SustainPine v1.1 218
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HYI3_POPTR 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 3.99796e-31
Internal
sp_v1.1_unigene5596 SustainPine v1.1 633
• AutoFact: DCL901; dicer-like protein; K11592 endoribonuclease Dicer [EC:3.1.26.-] 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 0.0
C-terminus
sp_v1.1_unigene5629 SustainPine v1.1 1172
• AutoFact: CAF protein n=1 Tax=Arabidopsis thaliana RepID=Q56Y50_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 0.0
Complete
sp_v1.1_unigene5644 SustainPine v1.1 845
• AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO 3.0e-34
• FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase 6 5.93957e-37
Putative N-terminus
sp_v1.1_unigene5806 SustainPine v1.1 613
• AutoFact: dicer-1, putative (EC:3.1.26.3); K11592 endoribonuclease Dicer [EC:3.1.26.-] 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: dcl1 0.0
Internal
sp_v1.1_unigene6824 SustainPine v1.1 1702
• AutoFact: rgd1, SGS3, lbl1; ragged seedling1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reduced leaflet 1 0.0
Putative C-terminus
sp_v1.1_unigene8954 SustainPine v1.1 1998
• AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9S921_RICCO 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: eukaryotic translation initiation factor 0.0
C-terminus
sp_v1.1_unigene12168 SustainPine v1.1 304
• AutoFact: Isoform 2 of Endoribonuclease Dicer homolog 4 n=2 Tax=Oryza sativa RepID=A7LFZ6-2 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 2.13913e-32
Internal
sp_v1.1_unigene12957 SustainPine v1.1 266
• AutoFact: Ribonuclease III, putative (EC:3.1.26.3); K11592 endoribonuclease Dicer [EC:3.1.26.-] 5.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 3.02949e-18
N-terminus
sp_v1.1_unigene14340 SustainPine v1.1 2496
• AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dsrna-specific nuclease dicer and related ribonuclease 0.0
Putative Complete
sp_v1.1_unigene16697 SustainPine v1.1 2276
• AutoFact: rgd1, SGS3, lbl1; ragged seedling1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: suppressor of silencing 0.0
Putative Complete
sp_v1.1_unigene17366 SustainPine v1.1 1290
• AutoFact: rgd1, SGS3, lbl1; ragged seedling1 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: sgs3_orysi ame: full=protein suppressor of gene silencing 3 homolog short= 3 0.0
Complete
sp_v1.1_unigene18011 SustainPine v1.1 720
• AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SIL6_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 0.0
Internal
sp_v1.1_unigene20754 SustainPine v1.1 546
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dicer-like protein 0.0
Internal
sp_v1.1_unigene26250 SustainPine v1.1 2175
• AutoFact: HYL1; HYL1 (HYPONASTIC LEAVES 1); double-stranded RNA binding / miRNA binding / protein binding 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dsrna-binding protein 4.2039e-45
Complete
sp_v1.1_unigene28427 SustainPine v1.1 552
• AutoFact: SE (SERRATE); DNA binding / transcription factor [Arabidopsis thaliana] sp|Q9ZVD0.2|SRRT_ARATH RecName: Full=Serrate RNA effector molecule gb|AAK63206.1|AF311221_1 C2H2 zinc-finger protein SERRATE [Arabidopsis thaliana] gb|AAL16137.1|AF428305_1 At2g27100/ 0.0
• FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: c2h2 zinc-finger protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain