Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: chromatin remodeling complex

Term: GO:0016585  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene1668 SustainPine v1.1 3153
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: at2g46020-like protein 0.0
C-terminus
sp_v1.1_unigene1929 SustainPine v1.1 1146
AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
C-terminus
sp_v1.1_unigene1952 SustainPine v1.1 1069
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: swi snf class chromatin remodeling complex protein 0.0
N-terminus
sp_v1.1_unigene6079 SustainPine v1.1 1843
AutoFact: WD-40 repeat-containing protein MSI1 n=13 Tax=core eudicotyledons RepID=MSI1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: multicopy suppressor of ira1 0.0
Complete
sp_v1.1_unigene7638 SustainPine v1.1 460
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: at2g46020-like protein 0.0
Internal
sp_v1.1_unigene10138 SustainPine v1.1 2128
AutoFact: WD-40 repeat-containing protein MSI1 n=13 Tax=core eudicotyledons RepID=MSI1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: multicopy suppressor of ira1 0.0
Complete
sp_v1.1_unigene26176 SustainPine v1.1 1044
AutoFact: NFC901; nucleosome/chromatin assembly factor group; K10752 histone-binding protein RBBP4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
C-terminus
sp_v1.1_unigene34138 SustainPine v1.1 277
AutoFact: ARP906; actin related protein; K11662 actin-related protein 6 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 6 1.48832e-25
Putative N-terminus
sp_v1.1_unigene35458 SustainPine v1.1 959
AutoFact: ARP1505; actin-related protein Arp6; K11662 actin-related protein 6 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 6 0.0
N-terminus
sp_v1.1_unigene36406 SustainPine v1.1 1116
AutoFact: nfc103; MSI type nucleosome/chromatin assembly factor C; K10752 histone-binding protein RBBP4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
C-terminus
sp_v1.1_unigene38560 SustainPine v1.1 888
AutoFact: Helicase, putative n=1 Tax=Ricinus communis RepID=B9SBN6_RICCO 0.0
FL-Next: sp=Probable chromatin-remodeling complex ATPase chain; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: swr1 complex snf2 family dna-dependent atpase 0.0
Internal
sp_v1.1_unigene38734 SustainPine v1.1 670
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 8.0e-24
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromo domain 1.21317e-25
Internal
sp_v1.1_unigene45069 SustainPine v1.1 169
AutoFact: PREDICTED: similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase n=1 Tax=Vitis vinifera RepID=UPI0001983E18 3.0e-16
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Blast2go: swr1 complex snf2 family dna-dependent atpase 4.84667e-16
Internal
sp_v1.1_unigene61672 SustainPine v1.1 416
AutoFact: ATP-dependent helicase BRM n=4 Tax=Arabidopsis RepID=BRM_ARATH 6.0e-28
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swi snf class chromatin remodeling complex protein 9.00501e-28
Internal
sp_v1.1_unigene65332 SustainPine v1.1 186
AutoFact: ARP906; actin related protein; K11662 actin-related protein 6 6.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: actin-related protein 6 6.49525e-16
Internal
sp_v1.1_unigene68957 SustainPine v1.1 380
AutoFact: MSI type nucleosome/chromatin assembly factor C, putative n=1 Tax=Oryza sativa Japonica Group RepID=Q6ASS7_ORYSJ 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 4.89374e-24
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain