Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: rna binding

Source: Description from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene17726 SustainPine v1.1 825
AutoFact: RNA recognition motif (RRM)-containing protein 2.0e-23
FL-Next: sp=Glycine-rich RNA-binding protein 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene23485 SustainPine v1.1 1269
AutoFact: Lge1 domain containing protein 0.0001
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 2.53469e-28
C-terminus
sp_v1.1_unigene23805 SustainPine v1.1 2613
AutoFact: zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidop 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene27805 SustainPine v1.1 1672
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
C-terminus
sp_v1.1_unigene28833 SustainPine v1.1 1082
AutoFact: DUF1777 multi-domain protein 9.0e-07
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: rna binding 3.79992e-19
Putative Complete
sp_v1.1_unigene29352 SustainPine v1.1 430
AutoFact: ENT domain containing protein 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 3.84282e-13
C-terminus
sp_v1.1_unigene29627 SustainPine v1.1 886
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RRQ3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein Sb04g004900; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: rna binding 0.0
N-terminus
sp_v1.1_unigene30878 SustainPine v1.1 704
AutoFact: RNA binding protein n=1 Tax=Zea mays RepID=B6T9D3_MAIZE 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 5.15689e-19
C-terminus
sp_v1.1_unigene30903 SustainPine v1.1 472
AutoFact: NOL1/NOP2/sun family protein [Arabidopsis thaliana] gb|AAP21258.1| At1g06560 [Arabidopsis thaliana] dbj|BAE99704.1| hypothetical protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Internal
sp_v1.1_unigene31968 SustainPine v1.1 322
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 3.66827e-12
Internal
sp_v1.1_unigene35421 SustainPine v1.1 648
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7W6_RICCO 6.0e-21
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 1.02403e-20
N-terminus
sp_v1.1_unigene36815 SustainPine v1.1 432
AutoFact: RNA binding protein, putative 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 1.18126e-38
C-terminus
sp_v1.1_unigene38246 SustainPine v1.1 767
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
N-terminus
sp_v1.1_unigene38510 SustainPine v1.1 559
AutoFact: RNA binding 5.0e-37
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: rna binding 2.36399e-42
Internal
sp_v1.1_unigene40599 SustainPine v1.1 554
AutoFact: RNA binding protein, putative 1.0e-13
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: rna binding 3.26186e-15
Putative C-terminus
sp_v1.1_unigene43036 SustainPine v1.1 299
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RE60_RICCO 5.0e-18
FL-Next: tr=G patch domain-containing protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 2.76058e-19
Internal
sp_v1.1_unigene43303 SustainPine v1.1 663
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 1.95127e-33
N-terminus
sp_v1.1_unigene46959 SustainPine v1.1 415
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T609_RICCO 5.0e-21
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: rna binding 1.02868e-20
Internal
sp_v1.1_unigene48267 SustainPine v1.1 306
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RE60_RICCO 1.0e-18
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: rna binding 2.31145e-18
Internal
sp_v1.1_unigene48516 SustainPine v1.1 306
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 2.0e-39
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 4.0518e-39
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain