Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: rna binding

Source: Description from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene1075 SustainPine v1.1 958
AutoFact: agenet domain-containing protein [Arabidopsis thaliana] gb|AAF82162.1|AC068143_4 Contains similarity to a hypothetical protein T31J12.4 gi|4337176 from Arabidopsis thaliana BAC T31J12 gb|AC006416 gb|ABR46226.1| At1g06340 [Arabidopsis thaliana] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 7.00649e-45
Putative N-terminus
sp_v1.1_unigene1658 SustainPine v1.1 1623
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
C-terminus
sp_v1.1_unigene3408 SustainPine v1.1 1031
AutoFact: RNA binding protein 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene3920 SustainPine v1.1 782
AutoFact: RNA binding protein, putative 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 2.30827e-29
C-terminus
sp_v1.1_unigene4683 SustainPine v1.1 624
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S651_RICCO 3.0e-25
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: rna binding 4.72328e-25
Internal
sp_v1.1_unigene4982 SustainPine v1.1 2507
AutoFact: RNA binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene5347 SustainPine v1.1 1346
AutoFact: DUF1777 multi-domain protein 4.0e-08
FL-Next: sp=Pectinesterase; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 2.14007e-14
C-terminus
sp_v1.1_unigene5442 SustainPine v1.1 750
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
N-terminus
sp_v1.1_unigene5570 SustainPine v1.1 1661
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
C-terminus
sp_v1.1_unigene6168 SustainPine v1.1 1905
AutoFact: RNA-binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene8419 SustainPine v1.1 901
AutoFact: PREDICTED: similar to Os03g0326600 n=1 Tax=Vitis vinifera RepID=UPI000198352E 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 0.0
C-terminus
sp_v1.1_unigene9014 SustainPine v1.1 1158
AutoFact: intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Putative C-terminus
sp_v1.1_unigene9469 SustainPine v1.1 723
AutoFact: RNA binding protein, putative; K13123 G patch domain-containing protein 1 3.0e-38
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: rna binding 7.28475e-40
Internal
sp_v1.1_unigene9555 SustainPine v1.1 1849
AutoFact: intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
C-terminus
sp_v1.1_unigene9783 SustainPine v1.1 3557
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene13652 SustainPine v1.1 2484
AutoFact: nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb|AAO23575.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene14406 SustainPine v1.1 868
AutoFact: RNA binding protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Internal
sp_v1.1_unigene16021 SustainPine v1.1 1116
AutoFact: RNA binding protein, putative 6.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene16484 SustainPine v1.1 3504
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete
sp_v1.1_unigene16818 SustainPine v1.1 761
AutoFact: RNA binding protein, putative 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain