Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene976 SustainPine v1.1 1365
• AutoFact: DNA repair protein xp-E, putative n=1 Tax=Ricinus communis RepID=B9SKT9_RICCO 0.0
• FL-Next: sp=DNA damage-binding protein 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Blast2go: uv-damaged dna-binding 0.0
C-terminus
sp_v1.1_unigene1844 SustainPine v1.1 2605
• AutoFact: Eukaryotic translation initiation factor 3 subunit, putative; K03253 translation initiation factor eIF-3 subunit 9 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 3 0.0
Complete
sp_v1.1_unigene4850 SustainPine v1.1 379
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S355_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atp-dependent rna 0.0
Internal
sp_v1.1_unigene10101 SustainPine v1.1 1460
• AutoFact: dead box ATP-dependent RNA helicase, putative; K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene10128 SustainPine v1.1 900
• AutoFact: aminoacyl-tRNA ligase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] 5.0e-27
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: aspartate--trna ligase 1.06222e-26
C-terminus
sp_v1.1_unigene10150 SustainPine v1.1 1296
• AutoFact: poly-A binding protein, putative 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: poly-a binding 0.0
C-terminus
sp_v1.1_unigene10185 SustainPine v1.1 1165
• AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene10191 SustainPine v1.1 646
• AutoFact: Pupative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q75IL9_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon ty1-copia subclass 0.0
N-terminus
sp_v1.1_unigene10331 SustainPine v1.1 1896
• AutoFact: ALATS; ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cytosolic trna-ala synthetase 0.0
Putative Complete
sp_v1.1_unigene10457 SustainPine v1.1 519
• AutoFact: ATP-dependent RNA and DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SEF1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: atp-dependent rna and dna 0.0
Internal
sp_v1.1_unigene10495 SustainPine v1.1 1463
• AutoFact: zinc finger (C2H2 type) family protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: zinc finger family protein 0.0
N-terminus
sp_v1.1_unigene10614 SustainPine v1.1 834
• AutoFact: KH domain containing protein, putative [Solanum demissum] 7.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: kh domain-containing protein 0.0
N-terminus
sp_v1.1_unigene10734 SustainPine v1.1 402
• AutoFact: nucleic acid binding 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: macronuclear development protein 1.55073e-22
N-terminus
sp_v1.1_unigene10740 SustainPine v1.1 732
• AutoFact: Unassigned protein 7.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 1.27704e-31
C-terminus
sp_v1.1_unigene10741 SustainPine v1.1 1718
• AutoFact: dead box ATP-dependent RNA helicase, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead box atp-dependent rna 0.0
Putative Complete
sp_v1.1_unigene10792 SustainPine v1.1 492
• AutoFact: Argonaute/Zwille-like protein n=1 Tax=Picea glauca RepID=Q4PLA9_PICGL 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: argonaute protein group 0.0
Internal
sp_v1.1_unigene10847 SustainPine v1.1 284
• AutoFact: Unassigned protein 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 6.83723e-15
N-terminus
sp_v1.1_unigene10886 SustainPine v1.1 660
• AutoFact: DNA helicase recq1, putative; K10899 ATP-dependent DNA helicase Q1 [EC:3.6.1.-] 3.0e-38
• FL-Next: sp=ATP-dependent DNA helicase Q-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna helicase 1.17709e-43
Putative N-terminus
sp_v1.1_unigene11035 SustainPine v1.1 732
• AutoFact: cleavage and polyadenylation specificity factor cpsf, putative 2.0e-26
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: cleavage and polyadenylation specificity factor 6.5587e-28
C-terminus
sp_v1.1_unigene11245 SustainPine v1.1 902
• AutoFact: nucleic acid binding 3.0e-26
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: protein 4.82285e-32
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain