Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: nuclear mRNA splicing, via spliceosome

Term: GO:0000398  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene766 SustainPine v1.1 1304
• AutoFact: Ribonucleic acid binding protein S1, putative n=1 Tax=Ricinus communis RepID=B9RI44_RICCO 8.96831e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribonucleic acid binding protein 0.0
Putative Complete
sp_v1.1_unigene3439 SustainPine v1.1 2353
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: u1 snrnp 70k protein 0.0
Complete
sp_v1.1_unigene4086 SustainPine v1.1 1920
• AutoFact: ribonucleic acid binding protein S1, putative 7.00649e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene4638 SustainPine v1.1 1436
• AutoFact: arginine/serine-rich splicing factor, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 0.0
Putative C-terminus
sp_v1.1_unigene11720 SustainPine v1.1 1742
• AutoFact: U4/U6 small nuclear ribonucleoprotein Prp4, putative (EC:2.3.1.48); K12662 U4/U6 small nuclear ribonucleoprotein PRP4 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene12632 SustainPine v1.1 1385
• AutoFact: Pre-mRNA splicing factor, putative n=1 Tax=Ricinus communis RepID=B9RW28_RICCO 0.0
• FL-Next: tr=Pre-mRNA splicing factor, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: pre-mrna splicing factor 0.0
Internal
sp_v1.1_unigene16146 SustainPine v1.1 1418
• AutoFact: transcription factor IIB, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor iib 0.0
Complete
sp_v1.1_unigene16394 SustainPine v1.1 1520
• AutoFact: pre-mRNA-splicing factor prp45; K06063 SNW domain-containing protein 1 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: nuclear protein 0.0
N-terminus
sp_v1.1_unigene16695 SustainPine v1.1 1388
• AutoFact: Pre-mRNA-processing-splicing factor, putative n=2 Tax=Magnoliophyta RepID=B9RV85_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: protein 0.0
Internal
sp_v1.1_unigene17131 SustainPine v1.1 737
• AutoFact: Barley B recombinant n=1 Tax=Hordeum vulgare RepID=Q8GUC3_HORVU 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: gaga binding family expressed 0.0
C-terminus
sp_v1.1_unigene17191 SustainPine v1.1 1075
• AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S8J4_PHYPA 3.00018e-42
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: nuclear protein 0.0
C-terminus
sp_v1.1_unigene17225 SustainPine v1.1 1244
• AutoFact: Pre-mRNA-splicing factor cwc15, putative; K12863 protein CWC15 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna-splicing factor cwc15 0.0
Complete
sp_v1.1_unigene17236 SustainPine v1.1 1304
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative; K11093 U1 small nuclear ribonucleoprotein 70kDa 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 snrnp 70k protein 0.0
N-terminus
sp_v1.1_unigene18606 SustainPine v1.1 1033
• AutoFact: Splicing factor 3B subunit, putative; K12832 splicing factor 3B subunit 5 2.99878e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 3.22299e-44
Complete
sp_v1.1_unigene19100 SustainPine v1.1 1180
• AutoFact: serine/arginine rich splicing factor, putative 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif family expressed 0.0
Putative Complete
sp_v1.1_unigene19251 SustainPine v1.1 625
• AutoFact: Nuclear protein skip, putative n=1 Tax=Ricinus communis RepID=B9SX87_RICCO 3.0e-37
• FL-Next: tr=Nuclear protein skip, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: nuclear protein 1.85086e-37
C-terminus
sp_v1.1_unigene19276 SustainPine v1.1 592
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor-like protein 0.0
N-terminus
sp_v1.1_unigene22998 SustainPine v1.1 1814
• AutoFact: U2 small nuclear ribonucleoprotein A n=1 Tax=Gossypium hirsutum RepID=D6N3G9_GOSHI 0.0
• FL-Next: sp=U2 small nuclear ribonucleoprotein A'; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: u2 small nuclear ribonucleoprotein a 0.0
Complete
sp_v1.1_unigene29879 SustainPine v1.1 1813
• AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u1 snrnp 70k protein 0.0
N-terminus
sp_v1.1_unigene40513 SustainPine v1.1 1263
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain