Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: nuclear speck

Term: GO:0016607  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v1.1_unigene766 SustainPine v1.1 1304
• AutoFact: Ribonucleic acid binding protein S1, putative n=1 Tax=Ricinus communis RepID=B9RI44_RICCO 8.96831e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribonucleic acid binding protein 0.0
Putative Complete
sp_v1.1_unigene2090 SustainPine v1.1 2364
• AutoFact: CRN (Crooked neck) protein n=1 Tax=Arabidopsis thaliana RepID=Q9FNM3_ARATH 0.0
• FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
• Blast2go: crooked neck cell cycle 0.0
Putative C-terminus
sp_v1.1_unigene2495 SustainPine v1.1 1602
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SEX4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene2827 SustainPine v1.1 3115
• AutoFact: 116 kD U5 small nuclear ribonucleoprotein component, putative; K12852 116 kDa U5 small nuclear ribonucleoprotein component 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: elongation factor tu gtp-binding domain protein 2 0.0
Putative Complete
sp_v1.1_unigene3321 SustainPine v1.1 1734
• AutoFact: N6-adenosine-methyltransferase 70 kDa subunit, putative (EC:2.1.1.62) 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: n6-adenosine-methyltransferase 70 kda 0.0
C-terminus
sp_v1.1_unigene3987 SustainPine v1.1 2133
• AutoFact: Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO 0.0
• FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: c2h2 zinc-finger protein 0.0
C-terminus
sp_v1.1_unigene4086 SustainPine v1.1 1920
• AutoFact: ribonucleic acid binding protein S1, putative 7.00649e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v1.1_unigene4619 SustainPine v1.1 638
• AutoFact: SR1; SR1; RNA binding / nucleic acid binding / nucleotide binding; K12890 splicing factor, arginine/serine-rich 1/9 3.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 5.83921e-42
N-terminus
sp_v1.1_unigene4638 SustainPine v1.1 1436
• AutoFact: arginine/serine-rich splicing factor, putative 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 0.0
Putative C-terminus
sp_v1.1_unigene5308 SustainPine v1.1 639
• AutoFact: serine/arginine rich splicing factor, putative; K12891 splicing factor, arginine/serine-rich 2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: serine arginine rich splicing 0.0
N-terminus
sp_v1.1_unigene11720 SustainPine v1.1 1742
• AutoFact: U4/U6 small nuclear ribonucleoprotein Prp4, putative (EC:2.3.1.48); K12662 U4/U6 small nuclear ribonucleoprotein PRP4 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative Complete
sp_v1.1_unigene14534 SustainPine v1.1 1880
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atrsp41 rna binding nucleic acid binding nucleotide binding 0.0
Putative Complete
sp_v1.1_unigene18724 SustainPine v1.1 1472
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor at-srp40 0.0
Complete
sp_v1.1_unigene19100 SustainPine v1.1 1180
• AutoFact: serine/arginine rich splicing factor, putative 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif family expressed 0.0
Putative Complete
sp_v1.1_unigene19117 SustainPine v1.1 1866
• AutoFact: DEAD-box ATP-dependent RNA helicase 2 n=7 Tax=Poaceae RepID=RH2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nicotiana eukaryotic translation initiation factor 4a 0.0
Complete
sp_v1.1_unigene19276 SustainPine v1.1 592
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor-like protein 0.0
N-terminus
sp_v1.1_unigene20300 SustainPine v1.1 1448
• AutoFact: Os02g0252100 protein n=7 Tax=Oryza sativa RepID=Q6K542_ORYSJ 8.99999e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna splicing factor 0.0
Complete
sp_v1.1_unigene20937 SustainPine v1.1 1422
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor at-srp40 0.0
Complete
sp_v1.1_unigene21712 SustainPine v1.1 615
• AutoFact: RSZ32; zinc knuckle (CCHC-type) family protein 1.0e-12
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: arginine serine-rich splicing 5.13861e-16
Complete
sp_v1.1_unigene23770 SustainPine v1.1 2058
• AutoFact: DEAD-box ATP-dependent RNA helicase 2 n=7 Tax=Poaceae RepID=RH2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nicotiana eukaryotic translation initiation factor 4a 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain