Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene667 SustainPine v1.1 1851
AutoFact: CPSF30; CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: c-x8-c-x5-c-x3-h type zn-finger 0.0
Putative N-terminus
sp_v1.1_unigene3043 SustainPine v1.1 1314
AutoFact: Galactokinase, putative n=1 Tax=Ricinus communis RepID=B9SPS4_RICCO 0.0
FL-Next: sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene3433 SustainPine v1.1 1126
AutoFact: ARA1; ARA1 (ARABINOSE KINASE); ATP binding / L-arabinokinase/ galactokinase; K12446 L-arabinokinase [EC:2.7.1.46] 0.0
FL-Next: sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: galactokinase like protein 0.0
Putative N-terminus
sp_v1.1_unigene4969 SustainPine v1.1 573
AutoFact: YTH domain containing protein 7.0e-19
FL-Next: sp=Cleavage and polyadenylation specificity factor CPSF30; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene6645 SustainPine v1.1 831
AutoFact: peptide chain release factor, putative; K02836 peptide chain release factor RF-2 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: peptide chain release factor 2 0.0
C-terminus
sp_v1.1_unigene8921 SustainPine v1.1 1824
AutoFact: symplekin, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene10788 SustainPine v1.1 625
AutoFact: ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: symplekin 3.24961e-42
Internal
sp_v1.1_unigene11107 SustainPine v1.1 1080
AutoFact: magnesium transporter CorA-like protein-related 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 3.39211e-36
C-terminus
sp_v1.1_unigene12155 SustainPine v1.1 1743
AutoFact: [J] COG2123 RNase PH-related exoribonuclease 5.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex exonuclease 0.0
Complete
sp_v1.1_unigene13622 SustainPine v1.1 594
AutoFact: ESP4 (ENHANCED SILENCING PHENOTYPE 4); binding [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
sp_v1.1_unigene13809 SustainPine v1.1 713
AutoFact: galactokinase, putative (EC:2.7.1.6); K12446 L-arabinokinase [EC:2.7.1.46] 0.0
FL-Next: sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: galactokinase like protein 0.0
Internal
sp_v1.1_unigene14072 SustainPine v1.1 734
AutoFact: 60S ribosomal protein-related 6.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v1.1_unigene14216 SustainPine v1.1 1240
AutoFact: Ribosomal protein n=3 Tax=Spermatophyta RepID=A9NNS9_PICSI 0.0
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l10a-1 0.0
Complete
sp_v1.1_unigene14538 SustainPine v1.1 795
AutoFact: Magnesium chelatase H subunit n=4 Tax=rosids RepID=D5KXY0_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: magnesium chelatase h subunit 0.0
Internal
sp_v1.1_unigene14595 SustainPine v1.1 604
AutoFact: peptide chain release factor, putative; K02836 peptide chain release factor RF-2 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: translation releasing factor rf-2 5.32482e-31
N-terminus
sp_v1.1_unigene14745 SustainPine v1.1 483
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SII5_VITVI 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: proline-rich family protein 1.98004e-17
N-terminus
sp_v1.1_unigene15716 SustainPine v1.1 2023
AutoFact: Ribosomal protein n=1 Tax=Picea sitchensis RepID=A9P244_PICSI 0.0
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene16222 SustainPine v1.1 1690
AutoFact: spliceosome associated protein, putative; K12825 splicing factor 3A subunit 1 0.0
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene16294 SustainPine v1.1 2403
AutoFact: SWAP domain-containing protein-like protein (Fragment) n=5 Tax=Picea sitchensis RepID=E0ZI59_PICSI 0.0
FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swap domain-containing protein 0.0
Complete
sp_v1.1_unigene17095 SustainPine v1.1 1807
AutoFact: Similarity to ribonuclease III n=1 Tax=Cryptomeria japonica RepID=Q1XG54_CRYJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nfd2 (nuclear fusion defective 2) rna binding ribonuclease iii 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain