Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: DNA mediated transformation

Term: GO:0009294  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene396 SustainPine v1.1 2540
AutoFact: HDA902; histone deacetylase; K06067 histone deacetylase 1/2 [EC:3.5.1.98] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Complete
sp_v1.1_unigene466 SustainPine v1.1 3178
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gte4 (global transcription factor group e 4) dna binding 0.0
Complete
sp_v1.1_unigene543 SustainPine v1.1 2133
AutoFact: Elongator complex protein 3 n=9 Tax=Poaceae RepID=ELP3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
Complete
sp_v1.1_unigene775 SustainPine v1.1 1974
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: at1g06230-like protein 0.0
C-terminus
sp_v1.1_unigene1677 SustainPine v1.1 1528
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
C-terminus
sp_v1.1_unigene1837 SustainPine v1.1 1702
AutoFact: Cellulose synthase-like A2 n=1 Tax=Pinus taeda RepID=A3QT95_PINTA 0.0
FL-Next: tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine). 0.0
Blast2go: protein 0.0
C-terminus
sp_v1.1_unigene2590 SustainPine v1.1 1605
AutoFact: SDG910; SET domain protein; K11430 enhancer of zeste [EC:2.1.1.43] 0.0
FL-Next: sp=Histone-lysine N-methyltransferase CLF; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: set domain protein 0.0
C-terminus
sp_v1.1_unigene2679 SustainPine v1.1 3454
AutoFact: Cellulose synthase-like A1 n=1 Tax=Pinus taeda RepID=A3QT94_PINTA 0.0
FL-Next: tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine). 0.0
Blast2go: protein 0.0
Complete
sp_v1.1_unigene3755 SustainPine v1.1 1852
AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9MYK9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna repair helicase 0.0
Putative Complete
sp_v1.1_unigene3845 SustainPine v1.1 572
AutoFact: DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9SN70_RICCO 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair helicase 0.0
Internal
sp_v1.1_unigene3977 SustainPine v1.1 980
AutoFact: trithorax, putative (EC:2.1.1.43) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: set domain protein 0.0
Putative Complete
sp_v1.1_unigene6281 SustainPine v1.1 234
AutoFact: HAF1501; transcription initiation factor TFIID, subunit TAF1; K03125 transcription initiation factor TFIID subunit D1 1.0e-13
FL-Next: sp=Transcription initiation factor TFIID subunit 1-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transcription initiation factor subunit taf1 1.83613e-15
C-terminus
sp_v1.1_unigene6601 SustainPine v1.1 730
AutoFact: Class II RPD3 type histone deacetylase protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TT63_PHYPA 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: class ii rpd3 type histone deacetylase protein 1.76361e-14
Putative C-terminus
sp_v1.1_unigene9200 SustainPine v1.1 2104
AutoFact: Class I RPD3 type histone deacetylase protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Complete
sp_v1.1_unigene9446 SustainPine v1.1 1198
AutoFact: SET domain-containing protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HSV4_POPTR 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: set domain-containing protein 4.29253e-32
Putative C-terminus
sp_v1.1_unigene9990 SustainPine v1.1 968
AutoFact: umc2323; LOC100283736; K10753 histone chaperone ASF1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: silencing group a protein 0.0
Putative Complete
sp_v1.1_unigene11699 SustainPine v1.1 3176
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gte4 (global transcription factor group e 4) dna binding 0.0
Complete
sp_v1.1_unigene12329 SustainPine v1.1 804
AutoFact: Transcription initiation factor TFIID, subunit TAF1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKZ9_PHYPA 0.0
FL-Next: sp=Transcription initiation factor TFIID subunit 1-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transcription initiation factor subunit taf1 0.0
Internal
sp_v1.1_unigene16493 SustainPine v1.1 1052
AutoFact: Histone H2A n=5 Tax=Pinaceae RepID=A9NK06_PICSI 2.0e-36
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h2a-like protein 4.2363e-36
Complete
sp_v1.1_unigene17575 SustainPine v1.1 924
AutoFact: SDG933; SET domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone-lysine n-methyltransferase 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain