Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: DNA mediated transformation

Term: GO:0009294  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene17654 SustainPine v1.1 933
AutoFact: Histone H2A n=5 Tax=Pinaceae RepID=A9NK06_PICSI 1.0e-26
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h2a-like protein 1.26875e-27
Putative Complete
sp_v1.1_unigene18846 SustainPine v1.1 582
AutoFact: Histone chaperone n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPE1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone chaperone 0.0
Putative Complete
sp_v1.1_unigene19630 SustainPine v1.1 1338
AutoFact: Nucleosome assembly protein family n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TVZ4_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome assembly protein 0.0
Putative Complete
sp_v1.1_unigene20709 SustainPine v1.1 382
AutoFact: Histone-lysine N-methyltransferase n=3 Tax=Andropogoneae RepID=C5XT28_SORBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: set domain protein 0.0
Putative C-terminus
sp_v1.1_unigene22934 SustainPine v1.1 1298
AutoFact: NFA1501; nucleosome assembly protein family; K11279 nucleosome assembly protein 1-like 1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome assembly protein family 0.0
Putative Complete
sp_v1.1_unigene22976 SustainPine v1.1 2983
AutoFact: ISWI chromatin remodeling complex ATPase ISW1, putative (EC:2.7.11.1) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Complete
sp_v1.1_unigene23171 SustainPine v1.1 1375
AutoFact: Anti-silencing protein, putative n=1 Tax=Ricinus communis RepID=B9SPY9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone chaperone 0.0
Complete
sp_v1.1_unigene26438 SustainPine v1.1 794
AutoFact: Histone H2A n=1 Tax=Picea sitchensis RepID=A9NTX3_PICSI 2.94273e-44
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h2a 5.88545e-44
Complete
sp_v1.1_unigene27989 SustainPine v1.1 1049
AutoFact: PREDICTED: similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase n=1 Tax=Vitis vinifera RepID=UPI0001985221 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 5.7472e-34
Complete
sp_v1.1_unigene29711 SustainPine v1.1 373
AutoFact: Transcription initiation factor TFIID, subunit TAF1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SMK3_PHYPA 0.0
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: transcription initiation factor subunit taf1 0.0
Internal
sp_v1.1_unigene34929 SustainPine v1.1 340
AutoFact: Histone methylase n=1 Tax=Zea mays RepID=B3VSN3_MAIZE 4.0e-23
FL-Next: sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: set domain protein 1.08566e-23
C-terminus
sp_v1.1_unigene35829 SustainPine v1.1 351
AutoFact: DNA (cytosine-5)-methyltransferase 1 n=2 Tax=Arabidopsis RepID=DNMT1_ARATH 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cytosine-5 dna methyltransferase 0.0
Internal
sp_v1.1_unigene36755 SustainPine v1.1 693
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Ricinus communis RepID=B9RWB0_RICCO 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna (cytosine-5)- 0.0
Internal
sp_v1.1_unigene37225 SustainPine v1.1 725
AutoFact: ATXR5; DNA binding / protein binding [Arabidopsis thaliana] emb|CAB89351.1| putative protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone-lysine n-methyltransferase 0.0
C-terminus
sp_v1.1_unigene37321 SustainPine v1.1 1067
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Ricinus communis RepID=B9RWB0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna methyltransferase 0.0
Putative Complete
sp_v1.1_unigene37901 SustainPine v1.1 681
AutoFact: Histone deacetylase HDAC4 n=1 Tax=Triticum aestivum RepID=Q0Z9W1_WHEAT 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
C-terminus
sp_v1.1_unigene38402 SustainPine v1.1 695
AutoFact: Cytosine-specific methyltransferase n=3 Tax=Nicotiana RepID=A0A9R7_TOBAC 1.00053e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna methyltransferase 2.81661e-43
Putative Complete
sp_v1.1_unigene38763 SustainPine v1.1 741
AutoFact: DNA repair helicase rad5,16, putative (EC:2.7.11.1) 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna repair helicase 0.0
Internal
sp_v1.1_unigene39330 SustainPine v1.1 419
AutoFact: SUVH9; SUVH9; histone-lysine N-methyltransferase/ zinc ion binding 2.0e-28
FL-Next: sp=Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: suvh9 histone-lysine n-methyltransferase zinc ion binding 2.69388e-30
Internal
sp_v1.1_unigene40075 SustainPine v1.1 678
AutoFact: Trithorax, putative n=1 Tax=Ricinus communis RepID=B9RII0_RICCO 0.0
FL-Next: sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: set domain protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain