Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: virus induced gene silencing

Term: GO:0009616  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene147 SustainPine v1.1 2702
AutoFact: Argonaute family member n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T6J3_PHYPA 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: argonaute family member 0.0
C-terminus
sp_v1.1_unigene1680 SustainPine v1.1 1817
AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v1.1_unigene3784 SustainPine v1.1 1905
AutoFact: Ribonuclease III, putative (EC:3.1.26.3); K11592 endoribonuclease Dicer [EC:3.1.26.-] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 0.0
C-terminus
sp_v1.1_unigene4925 SustainPine v1.1 715
AutoFact: RNA-dependent RNA polymerase 6 n=5 Tax=Nicotiana RepID=A9CRC9_TOBAC 0.0
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
Internal
sp_v1.1_unigene5629 SustainPine v1.1 1172
AutoFact: CAF protein n=1 Tax=Arabidopsis thaliana RepID=Q56Y50_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 0.0
Complete
sp_v1.1_unigene5644 SustainPine v1.1 845
AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO 3.0e-34
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 6 5.93957e-37
Putative N-terminus
sp_v1.1_unigene5806 SustainPine v1.1 613
AutoFact: dicer-1, putative (EC:3.1.26.3); K11592 endoribonuclease Dicer [EC:3.1.26.-] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dcl1 0.0
Internal
sp_v1.1_unigene6824 SustainPine v1.1 1702
AutoFact: rgd1, SGS3, lbl1; ragged seedling1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reduced leaflet 1 0.0
Putative C-terminus
sp_v1.1_unigene9305 SustainPine v1.1 654
AutoFact: HEN1; HEN1 (HUA ENHANCER 1); RNA methyltransferase 2.0e-18
FL-Next: sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: hen1 protein 1.61357e-21
C-terminus
sp_v1.1_unigene12168 SustainPine v1.1 304
AutoFact: Isoform 2 of Endoribonuclease Dicer homolog 4 n=2 Tax=Oryza sativa RepID=A7LFZ6-2 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 2.13913e-32
Internal
sp_v1.1_unigene12957 SustainPine v1.1 266
AutoFact: Ribonuclease III, putative (EC:3.1.26.3); K11592 endoribonuclease Dicer [EC:3.1.26.-] 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 3.02949e-18
N-terminus
sp_v1.1_unigene14340 SustainPine v1.1 2496
AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dsrna-specific nuclease dicer and related ribonuclease 0.0
Putative Complete
sp_v1.1_unigene16697 SustainPine v1.1 2276
AutoFact: rgd1, SGS3, lbl1; ragged seedling1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: suppressor of silencing 0.0
Putative Complete
sp_v1.1_unigene17366 SustainPine v1.1 1290
AutoFact: rgd1, SGS3, lbl1; ragged seedling1 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: sgs3_orysi ame: full=protein suppressor of gene silencing 3 homolog short= 3 0.0
Complete
sp_v1.1_unigene18011 SustainPine v1.1 720
AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SIL6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 0.0
Internal
sp_v1.1_unigene20754 SustainPine v1.1 546
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dicer-like protein 0.0
Internal
sp_v1.1_unigene29187 SustainPine v1.1 1026
AutoFact: Endoribonuclease Dicer homolog 1 n=2 Tax=Oryza sativa RepID=DCL1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dicer-like protein 0.0
Putative Complete
sp_v1.1_unigene29347 SustainPine v1.1 2545
AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 n=1 Tax=Solanum lycopersicum RepID=SGS3_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: suppressor of silencing 0.0
Complete
sp_v1.1_unigene29464 SustainPine v1.1 563
AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9SJV6_RICCO 3.0e-38
FL-Next: sp=Protein argonaute 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: eukaryotic translation initiation factor 4.82239e-38
Internal
sp_v1.1_unigene29826 SustainPine v1.1 641
AutoFact: HEN1; HEN1 (HUA ENHANCER 1); RNA methyltransferase 5.04467e-44
FL-Next: sp=Small RNA 2'-O-methyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: hen1 protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain