Sustainpine_db
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Assembly Name: SustainPine v1.1

Name: virus induced gene silencing

Term: GO:0009616  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v1.1_unigene36311 SustainPine v1.1 633
AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 0.0
Internal
sp_v1.1_unigene37163 SustainPine v1.1 777
AutoFact: rgd1, SGS3, lbl1; ragged seedling1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reduced leaflet 1 0.0
Putative C-terminus
sp_v1.1_unigene37383 SustainPine v1.1 1070
AutoFact: RNA-dependent RNA polymerase n=3 Tax=Arabidopsis RepID=Q9LKP0_ARATH 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v1.1_unigene40736 SustainPine v1.1 528
AutoFact: RDR905; rna-dependent RNA polymerase 0.0
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna-dependent rna polymerase 0.0
Internal
sp_v1.1_unigene41760 SustainPine v1.1 507
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 5.0e-31
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
Blast2go: dicer-like protein 9.45558e-31
N-terminus
sp_v1.1_unigene50964 SustainPine v1.1 351
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 3.0e-34
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: ribonuclease iii family protein 5.19515e-34
Internal
sp_v1.1_unigene53635 SustainPine v1.1 275
AutoFact: Argonaute protein group n=2 Tax=core eudicotyledons RepID=B9N365_POPTR 6.0e-37
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: argonaute protein group 6.49053e-37
Internal
sp_v1.1_unigene53835 SustainPine v1.1 477
AutoFact: Suppressor of gene silencing 3 protein (Fragment) n=1 Tax=Picea abies RepID=B2KZJ3_PICAB 8.0e-15
FL-Next: sp=Protein SUPPRESSOR OF GENE SILENCING 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: suppressor of gene silencing 3 protein 1.52435e-14
Internal
sp_v1.1_unigene58431 SustainPine v1.1 717
AutoFact: RDR905; rna-dependent RNA polymerase 3.0e-23
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna-dependent rna polymerase 2.00305e-24
C-terminus
sp_v1.1_unigene60896 SustainPine v1.1 838
AutoFact: rgd1, SGS3, lbl1; ragged seedling1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reduced leaflet 1 0.0
Internal
sp_v1.1_unigene62552 SustainPine v1.1 486
AutoFact: dicer-1, putative (EC:3.1.26.3); K11592 endoribonuclease Dicer [EC:3.1.26.-] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dsrna-specific nuclease dicer and related ribonuclease 0.0
Internal
sp_v1.1_unigene66139 SustainPine v1.1 369
AutoFact: Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9SJV6_RICCO 1.0e-34
FL-Next: sp=Protein argonaute 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein argonaute 2.36879e-34
Internal
sp_v1.1_unigene90373 SustainPine v1.1 781
AutoFact: rgd1, SGS3, lbl1; ragged seedling1 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: suppressor of silencing 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain