Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: 4-Coumarate:CoA ligase [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene8540 SustainPine v3.0 1990
AutoFact: 4-coumarate--CoA ligase n=18 Tax=Pinaceae RepID=4CL_PINTA 0.0
FL-Next: sp=4-coumarate--CoA ligase; Pinus taeda (Loblolly pine). 0.0
Sma3: 4-coumaroyl-CoA synthase 0.0
Complete
sp_v3.0_unigene21120 SustainPine v3.0 470
AutoFact: 4-coumarate:CoA ligase n=1 Tax=Ipomoea batatas RepID=B6F2H0_IPOBA 3.0e-12
FL-Next: tr=4-coumarate:CoA ligase; Pinus massoniana. 0.0
C-terminus
sp_v3.0_unigene25251 SustainPine v3.0 1723
AutoFact: AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9S209_RICCO 0.0
FL-Next: tr=4-coumarate:CoA ligase; Pinus massoniana. 0.0
Sma3: 4-coumarate:CoA ligase 1.429e-35
C-terminus
sp_v3.0_unigene31154 SustainPine v3.0 2477
AutoFact: AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9S209_RICCO 0.0
FL-Next: tr=4-coumarate:CoA ligase; Pinus massoniana. 0.0
Sma3: 4-coumarate:CoA ligase 0.0
Complete
sp_v3.0_unigene127584 SustainPine v3.0 942
AutoFact: 4-coumarate--CoA ligase n=18 Tax=Pinaceae RepID=4CL_PINTA 0.0
FL-Next: tr=4-coumarate:CoA ligase; Pinus massoniana. 0.0
Sma3: 4-coumarate:CoA ligase 3.697e-38
Misassembled
sp_v3.0_unigene143611 SustainPine v3.0 472
AutoFact: AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9S209_RICCO 0.0
FL-Next: tr=4-coumarate:CoA ligase; Pinus massoniana. 0.0
Sma3: 4-coumarate:CoA ligase 0.0
Internal
sp_v3.0_unigene144319 SustainPine v3.0 372
AutoFact: AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9S209_RICCO 1.0e-17
FL-Next: tr=4-coumarate:CoA ligase; Pinus massoniana. 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain