Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein, partial [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1022 SustainPine v3.0 1073
AutoFact: 60S ribosomal protein L13 n=4 Tax=Picea RepID=A9NTR4_PICSI 0.0
FL-Next: sp=60S ribosomal protein L13; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L13 0.0
Complete
sp_v3.0_unigene24783 SustainPine v3.0 505
AutoFact: PREDICTED: similar to ribosomal protein L13 n=1 Tax=Ciona intestinalis RepID=UPI00006A7442 2.0e-29
FL-Next: sp=60S ribosomal protein L13; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L13 0.0
C-terminus
sp_v3.0_unigene37787 SustainPine v3.0 733
AutoFact: 60S ribosomal protein L13 n=4 Tax=Picea RepID=A9NTR4_PICSI 0.0
FL-Next: sp=60S ribosomal protein L13; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L13 0.0
C-terminus
sp_v3.0_unigene59765 SustainPine v3.0 236
AutoFact: 60S ribosomal protein L13 n=4 Tax=Picea RepID=A9NTR4_PICSI 7.0e-16
FL-Next: sp=60S ribosomal protein L13; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L13 1.393e-20
Internal
sp_v3.0_unigene60358 SustainPine v3.0 402
AutoFact: 60S ribosomal protein L13 (Fragment) n=4 Tax=Populus trichocarpa RepID=B9IIX6_POPTR 2.0e-38
FL-Next: sp=60S ribosomal protein L13; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: 60S ribosomal protein L13 0.0
C-terminus
sp_v3.0_unigene75962 SustainPine v3.0 224
AutoFact: 60S ribosomal protein L13 n=4 Tax=Picea RepID=A9NTR4_PICSI 7.0e-15
FL-Next: sp=60S ribosomal protein L13; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L13 0.0
Misassembled
sp_v3.0_unigene155642 SustainPine v3.0 531
AutoFact: 60S ribosomal protein L13 n=1 Tax=Glycine max RepID=C6SYZ4_SOYBN 6.0e-33
FL-Next: sp=60S ribosomal protein L13; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: 60S ribosomal protein L13 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain