Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene7374 SustainPine v3.0 2555
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 7.311e-24
Putative Complete
sp_v3.0_unigene24027 SustainPine v3.0 1357
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gb|AAL67014.1| putative RNA helicase [Arabidopsis thaliana] gb|AAM91806.1| putative RNA helicase [Arabidopsis thaliana] gb|AEE31492.1| pre-mRNA-splicing factor ATP-dependent 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 6.004e-20
Putative C-terminus
sp_v3.0_unigene46471 SustainPine v3.0 282
• AutoFact: DEAD/DEAH box helicase [Dictyostelium discoideum AX4] sp|Q54MH3.1|DHX16_DICDI RecName: Full=Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16; AltName: Full=DEAH-box protein 16 gb|EAL64503.1| DEAD/DEAH box helicase [Dictyostelium discoide 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.925e-21
N-terminus
sp_v3.0_unigene59465 SustainPine v3.0 459
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 2.94273e-44
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene97269 SustainPine v3.0 1305
• AutoFact: PREDICTED: similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase n=1 Tax=Vitis vinifera RepID=UPI00019851EB 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.094e-34
Internal
sp_v3.0_unigene99654 SustainPine v3.0 501
• AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 6.4e-19
Internal
sp_v3.0_unigene162843 SustainPine v3.0 464
• AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.716e-16
Internal
sp_v3.0_unigene163408 SustainPine v3.0 407
• AutoFact: ATP-dependent RNA helicase (Fragment) n=1 Tax=Cucumis melo subsp. melo RepID=E5GBQ6_CUCME 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.112e-31
Internal
sp_v3.0_unigene208556 SustainPine v3.0 740
• AutoFact: putative RNA helicase [Oryza sativa Japonica Group] 6.0e-26
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative RNA helicase 1.97e-07
Putative Complete
sp_v3.0_unigene209640 SustainPine v3.0 463
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 9.031e-10
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain