Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein, partial [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1268 SustainPine v3.0 3852
• AutoFact: RNA recognition motif (ISS) [Ostreococcus tauri] emb|CAL51584.1| RNA recognition motif (ISS) [Ostreococcus tauri] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2922 SustainPine v3.0 993
• AutoFact: RNA binding motif protein 19 [Gallus gallus] ref|XP_001233414.1| PREDICTED: RNA binding motif protein 19 [Gallus gallus] 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene10540 SustainPine v3.0 980
• AutoFact: PREDICTED: probable RNA-binding protein 19 [Macaca mulatta] 7.0e-07
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene22172 SustainPine v3.0 463
• AutoFact: 5x RRM. Mrd1p like, splicing related [Cryptosporidium parvum Iowa II] emb|CAD98287.1| RNA-binding domain protein [Cryptosporidium parvum] gb|EAK90057.1| 5x RRM. Mrd1p like, splicing related [Cryptosporidium parvum Iowa II] 1.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene54522 SustainPine v3.0 212
• AutoFact: RNA-binding region RNP-1 domain-containing protein [Dictyostelium discoideum AX4] sp|Q54PB2.1|MRD1_DICDI RecName: Full=Multiple RNA-binding domain-containing protein 1; AltName: Full=RNA-binding motif protein 19 homolog; AltName: Full=RNA-binding protein 2.0e-10
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene95038 SustainPine v3.0 222
• AutoFact: RNA recognition motif (ISS) [Ostreococcus tauri] emb|CAL51584.1| RNA recognition motif (ISS) [Ostreococcus tauri] 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene130058 SustainPine v3.0 390
• AutoFact: RNA-binding region RNP-1 domain-containing protein [Dictyostelium discoideum AX4] sp|Q54PB2.1|MRD1_DICDI RecName: Full=Multiple RNA-binding domain-containing protein 1; AltName: Full=RNA-binding motif protein 19 homolog; AltName: Full=RNA-binding protein 3.0e-17
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene155079 SustainPine v3.0 321
• AutoFact: MRD1-like protein n=3 Tax=Metarhizium RepID=E9EMI6_METAR 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene193073 SustainPine v3.0 351
• AutoFact: PREDICTED: probable RNA-binding protein 19 [Macaca mulatta] 8.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain