Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: phytochrome [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1913 SustainPine v3.0 2472
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 6.172e-19
C-terminus
sp_v3.0_unigene2157 SustainPine v3.0 2443
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome N 0.0
C-terminus
sp_v3.0_unigene44631 SustainPine v3.0 277
AutoFact: Phytochrome (Fragment) n=1 Tax=Pseudotsuga menziesii RepID=Q40917_PSEMZ 1.0e-34
FL-Next: sp=Phytochrome; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phytochrome A 1.716e-20
Internal
sp_v3.0_unigene52450 SustainPine v3.0 209
AutoFact: Phytochrome n=1 Tax=Monotropastrum globosum RepID=Q6V7X1_9ERIC 1.0e-11
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative N-terminus
sp_v3.0_unigene61826 SustainPine v3.0 208
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 9.0e-31
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 8.40779e-44
Internal
sp_v3.0_unigene71803 SustainPine v3.0 342
AutoFact: Phytochrome n=1 Tax=Cuscuta pentagona RepID=Q6V7X3_CUSPE 5.0e-11
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 1.573e-08
Internal
sp_v3.0_unigene76584 SustainPine v3.0 261
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 1.4013e-45
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome 0.0
Internal
sp_v3.0_unigene79589 SustainPine v3.0 283
AutoFact: Phytochrome (Fragment) n=1 Tax=Pseudotsuga menziesii RepID=Q40917_PSEMZ 8.0e-33
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 7.793e-21
Internal
sp_v3.0_unigene106785 SustainPine v3.0 370
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome C 0.0
Internal
sp_v3.0_unigene107322 SustainPine v3.0 365
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 1.626e-19
Internal
sp_v3.0_unigene117765 SustainPine v3.0 189
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 1.0e-27
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 0.0
Internal
sp_v3.0_unigene123491 SustainPine v3.0 203
AutoFact: Phytochrome (Fragment) n=2 Tax=Picea abies RepID=Q40757_PICAB 3.0e-26
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome C 0.0
Internal
sp_v3.0_unigene124056 SustainPine v3.0 386
AutoFact: Phytochrome (Fragment) n=1 Tax=Pseudotsuga menziesii RepID=Q40917_PSEMZ 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome C 3.739e-24
Internal
sp_v3.0_unigene125530 SustainPine v3.0 116
AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 7.0e-15
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome D 9.551e-25
Internal
sp_v3.0_unigene165050 SustainPine v3.0 214
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 1.0e-21
FL-Next: sp=Phytochrome; Pinus sylvestris (Scots pine). 0.0
Sma3: Phytochrome A 0.0
Internal
sp_v3.0_unigene194919 SustainPine v3.0 403
AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Phytochrome A 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain