Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene53757 SustainPine v3.0 428
AutoFact: Elongation factor-1 alpha (Fragment) n=5 Tax=Eukaryota RepID=A9QA20_CATRO 9.0e-29
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 2.626e-31
N-terminus
sp_v3.0_unigene60073 SustainPine v3.0 186
AutoFact: Elongation factor 1-alpha, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TK78_RICCO 4.0e-13
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 8.572e-29
Internal
sp_v3.0_unigene61069 SustainPine v3.0 122
AutoFact: Elongation factor-1 alpha (Fragment) n=5 Tax=Eukaryota RepID=A9QA20_CATRO 2.0e-09
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 1.406e-36
Internal
sp_v3.0_unigene61239 SustainPine v3.0 188
AutoFact: Elongation factor-1 alpha (Fragment) n=5 Tax=Eukaryota RepID=A9QA20_CATRO 2.0e-23
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 1.282e-26
Internal
sp_v3.0_unigene64855 SustainPine v3.0 278
AutoFact: Elongation factor 1-alpha (Fragment) n=2 Tax=Polyphysaceae RepID=A5YKH8_ACEAT 3.0e-29
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 8.447e-20
Internal
sp_v3.0_unigene65529 SustainPine v3.0 370
AutoFact: Elongation factor 1-alpha n=1 Tax=Capsicum annuum RepID=Q9M516_CAPAN 2.0e-31
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 3.807e-31
Internal
sp_v3.0_unigene73688 SustainPine v3.0 445
AutoFact: Elongation factor 1-alpha, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TK78_RICCO 0.0
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 6.912e-34
Misassembled
sp_v3.0_unigene79033 SustainPine v3.0 366
AutoFact: Elongation factor 1-alpha (Fragment) n=1 Tax=Rimicaris exoculata RepID=D7F1R6_RIMEX 2.0e-26
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 3.186e-26
Internal
sp_v3.0_unigene102674 SustainPine v3.0 377
AutoFact: Elongation factor 1-alpha, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TK78_RICCO 0.0
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 4.42e-29
Internal
sp_v3.0_unigene143206 SustainPine v3.0 534
AutoFact: Elongation factor-1 alpha (Fragment) n=5 Tax=Eukaryota RepID=A9QA20_CATRO 7.0e-29
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 1.643e-31
Internal
sp_v3.0_unigene145974 SustainPine v3.0 1351
AutoFact: Elongation factor 1-alpha n=193 Tax=Eukaryota RepID=EF1A_ARATH 0.0
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 0.0
Misassembled
sp_v3.0_unigene166204 SustainPine v3.0 339
AutoFact: Elongation factor 1-alpha (Fragment) n=4 Tax=leotiomyceta RepID=Q0PPX7_9LECA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 0.0
Putative N-terminus
sp_v3.0_unigene203221 SustainPine v3.0 648
AutoFact: Elongation factor 1-alpha n=7 Tax=Percomorpha RepID=Q8UW60_ORENI 0.0
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 0.0
C-terminus
sp_v3.0_unigene208499 SustainPine v3.0 281
AutoFact: Elongation factor 1-alpha n=1 Tax=Capsicum annuum RepID=Q9M516_CAPAN 6.0e-28
FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Elongation factor 1-alpha 7.357e-39
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain