Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: predicted protein [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene23664 SustainPine v3.0 3049
AutoFact: RNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene34884 SustainPine v3.0 1869
AutoFact: DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] ref|NP_568244.2| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] sp|Q9LFN6.2|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56 sp|Q56XG6.3|RH15_ARATH RecName: Full=D 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene58786 SustainPine v3.0 413
AutoFact: Dead box ATP-dependent RNA helicase, putative n=2 Tax=Magnoliophyta RepID=B9TBR5_RICCO 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene74470 SustainPine v3.0 206
AutoFact: DEAD-box ATP-dependent RNA helicase 56 n=2 Tax=Arabidopsis thaliana RepID=F4JWF6_ARATH 8.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene75455 SustainPine v3.0 187
AutoFact: ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] gb|EAU92983.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene76434 SustainPine v3.0 359
AutoFact: ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] gb|EAU92983.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene150908 SustainPine v3.0 213
AutoFact: ATP-dependent RNA helicase SUB2 n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=SUB2_CRYNB 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene151231 SustainPine v3.0 376
AutoFact: eIF-4A-like DEAD family RNA helicase, putative n=6 Tax=Plasmodium RepID=A5KBQ1_PLAVS 9.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box family RNA helicase 4.873e-06
Putative C-terminus
sp_v3.0_unigene154848 SustainPine v3.0 297
AutoFact: HLA-B associated transcript 1 [Homo sapiens] emb|CAM25876.1| HLA-B associated transcript 1 [Homo sapiens] emb|CAO72085.1| HLA-B associated transcript 1 [Homo sapiens] emb|CAQ06507.1| HLA-B associated transcript 1 [Homo sapiens] emb|CAQ09976.1| HLA-B assoc 8.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 56 5.097e-09
Internal
sp_v3.0_unigene155381 SustainPine v3.0 359
AutoFact: Dead box family RNA helicase n=1 Tax=Thalassiosira pseudonana RepID=B8LBP2_THAPS 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene157822 SustainPine v3.0 277
AutoFact: PREDICTED: similar to nuclear RNA helicase Bat1 isoform 1 [Strongylocentrotus purpuratus] ref|XP_001178866.1| PREDICTED: similar to nuclear RNA helicase Bat1 [Strongylocentrotus purpuratus] ref|XP_001177126.1| PREDICTED: similar to nuclear RNA helicase Ba 6.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene158687 SustainPine v3.0 279
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 56 dbj|BAD88053.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica Group] dbj|BAG90417.1| unnamed protein product [Oryza sativa Japonica Group] gb|ACV83946.1| DExD box helicase protein HLA-B 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene159418 SustainPine v3.0 343
AutoFact: ATP-dependent RNA helicase SUB2 n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=SUB2_CRYNB 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene163318 SustainPine v3.0 404
AutoFact: DEAD-box ATP-dependent RNA helicase 56 n=2 Tax=Arabidopsis thaliana RepID=F4JWF6_ARATH 5.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain