Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene11484 SustainPine v3.0 1019
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18074 SustainPine v3.0 999
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene19060 SustainPine v3.0 584
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 5.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene19682 SustainPine v3.0 504
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene32189 SustainPine v3.0 391
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene33698 SustainPine v3.0 674
AutoFact: Small nuclear ribonucleoprotein polypeptide G (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677D4_HYAOR 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 4.479e-13
Complete
sp_v3.0_unigene52533 SustainPine v3.0 394
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 5.391e-13
Putative Complete
sp_v3.0_unigene57121 SustainPine v3.0 314
AutoFact: putative small nuclear ribonucleoprotein E [Oryza sativa Japonica Group] dbj|BAH01409.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEC82426.1| hypothetical protein OsI_26821 [Oryza sativa Indica Group] gb|EEE67563.1| hypothetical protein Os 4.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene127331 SustainPine v3.0 501
AutoFact: Small nuclear ribonucleoprotein polypeptide G (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677D4_HYAOR 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene150750 SustainPine v3.0 236
AutoFact: PREDICTED: similar to Sm protein G, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A59 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 4.83e-13
Putative Complete
sp_v3.0_unigene151749 SustainPine v3.0 249
AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 9.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: snRNP-G 4.361e-09
C-terminus
sp_v3.0_unigene151867 SustainPine v3.0 427
AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 4.921e-13
Complete
sp_v3.0_unigene198712 SustainPine v3.0 498
AutoFact: LSM domain containing protein 7.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain