Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: light-harvesting complex II protein Lhcb2 [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4405 SustainPine v3.0 643
AutoFact: chlorophyll a/b-binding protein [Picea glauca] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 2.843e-21
Complete
sp_v3.0_unigene11836 SustainPine v3.0 1435
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene17798 SustainPine v3.0 1393
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: Chlorophyll a/b-binding protein 0.0
Misassembled
sp_v3.0_unigene21382 SustainPine v3.0 983
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 5.593e-32
Complete
sp_v3.0_unigene21573 SustainPine v3.0 1325
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 1.201e-28
Complete
sp_v3.0_unigene22121 SustainPine v3.0 1184
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: Chlorophyll a/b-binding protein 0.0
Complete
sp_v3.0_unigene34658 SustainPine v3.0 1487
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: Chlorophyll a/b-binding protein 0.0
Misassembled
sp_v3.0_unigene54158 SustainPine v3.0 392
AutoFact: Chlorophyll a/b-binding protein n=1 Tax=Picea glauca RepID=Q9LKZ0_PICGL 6.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 2.444e-14
N-terminus
sp_v3.0_unigene63890 SustainPine v3.0 212
AutoFact: Chlorophyll a/b-binding protein n=1 Tax=Picea glauca RepID=Q9LKZ0_PICGL 8.0e-22
FL-Next: tr=Chlorophyll a/b-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: LHCP 3.801e-25
Internal
sp_v3.0_unigene77406 SustainPine v3.0 160
AutoFact: Chloroplast light-harvesting complex II protein Lhcbm3 n=1 Tax=Bigelowiella natans RepID=Q9LE97_BIGNA 8.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 5.957e-16
Internal
sp_v3.0_unigene120281 SustainPine v3.0 320
AutoFact: Chloroplast light-harvesting chlorophyll-a/b binding protein n=1 Tax=Ankistrodesmus convolutus RepID=C4P6Y3_9CHLO 5.0e-19
FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: LHCP 0.0
N-terminus
sp_v3.0_unigene126645 SustainPine v3.0 1684
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: Chlorophyll a/b-binding protein 0.0
Misassembled
sp_v3.0_unigene126720 SustainPine v3.0 1224
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: Chlorophyll a/b-binding protein 0.0
Complete
sp_v3.0_unigene127011 SustainPine v3.0 820
AutoFact: Chlorophyll a-b binding protein 151, chloroplastic n=18 Tax=Magnoliophyta RepID=CB21_GOSHI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 4.278e-31
Complete
sp_v3.0_unigene127445 SustainPine v3.0 1016
AutoFact: chlorophyll a/b-binding protein [Pinus thunbergii] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 7.591e-31
Misassembled
sp_v3.0_unigene143730 SustainPine v3.0 973
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: LHCP 2.527e-26
Complete
sp_v3.0_unigene144475 SustainPine v3.0 350
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 5.494e-16
N-terminus
sp_v3.0_unigene144963 SustainPine v3.0 390
AutoFact: Chlorophyll a/b-binding protein n=1 Tax=Picea glauca RepID=Q9LKZ0_PICGL 5.00264e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 6.163e-31
Internal
sp_v3.0_unigene146175 SustainPine v3.0 428
AutoFact: Chlorophyll a/b-binding protein n=1 Tax=Picea glauca RepID=Q9LKZ0_PICGL 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 3.183e-19
N-terminus
sp_v3.0_unigene146252 SustainPine v3.0 388
AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LHCP 5.239e-17
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain