Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mitochondrial beta subunit of F1 ATP synthase [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1494 SustainPine v3.0 2427
• AutoFact: ATP synthase subunit beta, mitochondrial n=4 Tax=Nicotiana RepID=ATPBM_NICPL 0.0
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene25739 SustainPine v3.0 724
• AutoFact: ATP synthase subunit beta n=1 Tax=Polytomella sp. Pringsheim 198.80 RepID=A0ZW41_9CHLO 0.0
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 7.674e-12
C-terminus
sp_v3.0_unigene28519 SustainPine v3.0 631
• AutoFact: ATP synthase subunit beta n=2 Tax=Bacillariophyta RepID=B7FS46_PHATC 0.0
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 1.176e-10
C-terminus
sp_v3.0_unigene54424 SustainPine v3.0 180
• AutoFact: ATP synthase subunit beta n=1 Tax=Nicotiana sylvestris RepID=Q9ZR78_NICSY 7.0e-21
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 1.043e-10
Internal
sp_v3.0_unigene65064 SustainPine v3.0 194
• AutoFact: ATP synthase subunit beta n=1 Tax=Bursaphelenchus xylophilus RepID=D1MBQ0_BURXY 1.0e-20
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 9.966e-14
Internal
sp_v3.0_unigene75781 SustainPine v3.0 461
• AutoFact: ATP synthase subunit beta n=2 Tax=Pucciniales RepID=E3K357_PUCGT 0.0
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 3.886e-13
Internal
sp_v3.0_unigene76741 SustainPine v3.0 198
• AutoFact: ATP synthase subunit beta, mitochondrial n=16 Tax=Magnoliophyta RepID=ATPBM_HEVBR 5.0e-13
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta, mitochondrial 4.733e-07
Misassembled
sp_v3.0_unigene77287 SustainPine v3.0 216
• AutoFact: ATP synthase subunit beta n=2 Tax=Agaricales RepID=B0CSN1_LACBS 4.0e-32
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 1.734e-20
Internal
sp_v3.0_unigene80965 SustainPine v3.0 220
• AutoFact: ATP synthase subunit beta (Fragment) n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NEG5_COPC7 1.0e-32
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta, mitochondrial 4.379e-10
Internal
sp_v3.0_unigene153266 SustainPine v3.0 393
• AutoFact: ATP synthase subunit beta n=2 Tax=Monosiga brevicollis RepID=A9UYC5_MONBE 3.0e-19
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: F-ATPase subunit beta 4.512e-17
C-terminus
sp_v3.0_unigene154207 SustainPine v3.0 500
• AutoFact: ATP synthase subunit beta n=1 Tax=Phytophthora infestans T30-4 RepID=D0N577_PHYIT 0.0
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 1.107e-10
Putative C-terminus
sp_v3.0_unigene155174 SustainPine v3.0 405
• AutoFact: ATP synthase subunit beta n=1 Tax=Branchiostoma floridae RepID=C3Z8M3_BRAFL 2.0e-37
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta, chloroplastic 9.876e-19
C-terminus
sp_v3.0_unigene155477 SustainPine v3.0 552
• AutoFact: ATP synthase subunit beta n=3 Tax=Tetraodontidae RepID=Q4S324_TETNG 0.0
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 1.426e-11
Putative C-terminus
sp_v3.0_unigene156307 SustainPine v3.0 283
• AutoFact: ATP synthase subunit beta n=6 Tax=Endopterygota RepID=D2A4R3_TRICA 6.0e-36
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 7.618e-11
C-terminus
sp_v3.0_unigene157085 SustainPine v3.0 461
• AutoFact: ATP synthase subunit beta n=1 Tax=Nitratiruptor sp. SB155-2 RepID=ATPB_NITSB 8.0e-14
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta, chloroplastic 1.474e-08
C-terminus
sp_v3.0_unigene157484 SustainPine v3.0 539
• AutoFact: ATP synthase subunit beta (Fragment) n=1 Tax=Brachionus plicatilis RepID=C7AIM9_BRAPC 0.0
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 3.175e-12
Internal
sp_v3.0_unigene191109 SustainPine v3.0 454
• AutoFact: ATP synthase subunit beta, mitochondrial n=3 Tax=Chlamydomonadales RepID=ATPBM_CHLRE 5.0e-15
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 4.091e-08
Putative C-terminus
sp_v3.0_unigene191217 SustainPine v3.0 472
• AutoFact: ATP synthase subunit beta n=1 Tax=Phytophthora infestans T30-4 RepID=D0N577_PHYIT 3.0e-24
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta 1.833e-11
C-terminus
sp_v3.0_unigene191299 SustainPine v3.0 362
• AutoFact: ATP synthase subunit beta n=1 Tax=Phytophthora sojae RepID=B6V9Y7_9STRA 3.0e-36
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta, mitochondrial 8.358e-10
C-terminus
sp_v3.0_unigene203093 SustainPine v3.0 479
• AutoFact: ATP synthase subunit beta n=1 Tax=Polytomella sp. Pringsheim 198.80 RepID=A0ZW41_9CHLO 6.02558e-44
• FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP synthase subunit beta, chloroplastic 1.255e-28
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain