Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: peroxisomal membrane ABC transporter family, PMP family, partial [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene14342 SustainPine v3.0 663
AutoFact: ABC transporter D family member 2, chloroplastic n=2 Tax=Arabidopsis RepID=AB2D_ARATH 9.0e-16
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene62023 SustainPine v3.0 198
AutoFact: Peroxisomal membrane ABC transporter family, PMP family (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HYE2_POPTR 2.0e-23
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene62689 SustainPine v3.0 323
AutoFact: Peroxisomal membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RKV1_RICCO 3.0e-11
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75166 SustainPine v3.0 137
AutoFact: AAA ATPase; ABC transporter, transmembrane region, type 1 [Medicago truncatula] 4.0e-15
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene124604 SustainPine v3.0 353
AutoFact: AAA ATPase; ABC transporter, transmembrane region, type 1 n=1 Tax=Medicago truncatula RepID=A2Q3K0_MEDTR 3.00004e-41
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene126154 SustainPine v3.0 235
AutoFact: ABC transporter D family member 2, chloroplastic n=2 Tax=Arabidopsis RepID=AB2D_ARATH 7.0e-13
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-binding cassette superfamily 2.192e-07
Internal
sp_v3.0_unigene167829 SustainPine v3.0 306
AutoFact: ATP-binding cassette transporter, subfamily D, member 2, group PMP protein PpABCD2 (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SSI7_PHYPA 1.0e-20
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene183076 SustainPine v3.0 436
AutoFact: Peroxisomal membrane ABC transporter family, PMP family (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HYE2_POPTR 0.0
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain