Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene17396 SustainPine v3.0 1239
• AutoFact: 40S ribosomal protein S3a-2 [Arabidopsis thaliana] sp|Q42262.3|RS3A2_ARATH RecName: Full=40S ribosomal protein S3a-2 emb|CAA04689.1| Putative S-phase-specific ribosomal protein [Arabidopsis thaliana] emb|CAA18846.1| Putative S-phase-specific ribosomal pro 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene19581 SustainPine v3.0 198
• AutoFact: 40S ribosomal protein S1 n=4 Tax=Agaricales RepID=RS3A_COPC7 5.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 7.492e-21
Internal
sp_v3.0_unigene21903 SustainPine v3.0 562
• AutoFact: Cyc07-like protein n=1 Tax=Solanum tuberosum RepID=Q2XPW5_SOLTU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 1.032e-17
Putative Complete
sp_v3.0_unigene27188 SustainPine v3.0 823
• AutoFact: 40S ribosomal protein S3a n=2 Tax=Chlamydomonadales RepID=RS3A_CHLRE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 4.891e-17
Putative Complete
sp_v3.0_unigene37277 SustainPine v3.0 2161
• AutoFact: 40S ribosomal protein S3a-2 [Arabidopsis thaliana] sp|Q42262.3|RS3A2_ARATH RecName: Full=40S ribosomal protein S3a-2 emb|CAA04689.1| Putative S-phase-specific ribosomal protein [Arabidopsis thaliana] emb|CAA18846.1| Putative S-phase-specific ribosomal pro 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene71153 SustainPine v3.0 406
• AutoFact: 40S ribosomal protein (Fragment) n=2 Tax=Pooideae RepID=Q7X9K6_WHEAT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein 0.0
C-terminus
sp_v3.0_unigene74077 SustainPine v3.0 361
• AutoFact: 40S ribosomal protein S3a n=2 Tax=Chlamydomonadales RepID=RS3A_CHLRE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 1.016e-20
Internal
sp_v3.0_unigene132940 SustainPine v3.0 235
• AutoFact: ribosomal S3a [Musa acuminata] 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 5.872e-21
C-terminus
sp_v3.0_unigene145718 SustainPine v3.0 716
• AutoFact: RecName: Full=40S ribosomal protein S3a emb|CAD56219.1| ribosomal protein S3a [Cicer arietinum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 1.5e-24
Misassembled
sp_v3.0_unigene145808 SustainPine v3.0 426
• AutoFact: 40S ribosomal protein S3a (Fragment) n=1 Tax=Pseudotsuga menziesii var. menziesii RepID=Q5MEK4_PSEMZ 2.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 0.0
C-terminus
sp_v3.0_unigene145911 SustainPine v3.0 569
• AutoFact: RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07 gb|ABA41527.1| cyc07 [Nicotiana tabacum] 5.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 9.573e-25
C-terminus
sp_v3.0_unigene150353 SustainPine v3.0 288
• AutoFact: 40S ribosomal protein S3a n=2 Tax=Chlamydomonadales RepID=RS3A_CHLRE 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 3.295e-17
Putative C-terminus
sp_v3.0_unigene153645 SustainPine v3.0 373
• AutoFact: 40S ribosomal protein S3a n=2 Tax=Chlamydomonadales RepID=RS3A_CHLRE 9.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 6.703e-21
Putative C-terminus
sp_v3.0_unigene154367 SustainPine v3.0 370
• AutoFact: 40S ribosomal protein S3 n=3 Tax=Hypocreomycetidae RepID=E9EUF1_METAR 6.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 5.872e-21
Internal
sp_v3.0_unigene154552 SustainPine v3.0 538
• AutoFact: 40S ribosomal protein S3a n=2 Tax=Chlamydomonadales RepID=RS3A_CHLRE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 1.5e-24
C-terminus
sp_v3.0_unigene156044 SustainPine v3.0 540
• AutoFact: 40S ribosomal protein S3a putative n=1 Tax=Albugo laibachii Nc14 RepID=F0W988_9STRA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 8.979e-21
Putative C-terminus
sp_v3.0_unigene157333 SustainPine v3.0 316
• AutoFact: 40S ribosomal protein S3a putative n=1 Tax=Albugo laibachii Nc14 RepID=F0W988_9STRA 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene157615 SustainPine v3.0 443
• AutoFact: 40S ribosomal protein S3 n=2 Tax=Pucciniales RepID=E3L5E7_PUCGT 3.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 6.1e-21
Putative C-terminus
sp_v3.0_unigene200479 SustainPine v3.0 390
• AutoFact: 40S ribosomal protein S3a n=2 Tax=Chlamydomonadales RepID=RS3A_CHLRE 8.40779e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 7.492e-21
Internal
sp_v3.0_unigene210272 SustainPine v3.0 246
• AutoFact: 40S ribosomal protein S3a-1 [Arabidopsis thaliana] sp|Q9CAV0.3|RS3A1_ARATH RecName: Full=40S ribosomal protein S3a-1 gb|AAG51414.1|AC009465_14 putative 40S ribosomal protein S3A (S phase specific); 75194-73527 [Arabidopsis thaliana] gb|AAL32874.1| putativ 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 1.041e-24
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain