Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein, partial [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene95317 SustainPine v3.0 560
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 2.0e-39
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.504e-22
Putative N-terminus
sp_v3.0_unigene105435 SustainPine v3.0 568
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.708e-19
Putative Complete
sp_v3.0_unigene112732 SustainPine v3.0 626
AutoFact: Reverse transcriptase family protein n=1 Tax=Asparagus officinalis RepID=Q2AA00_ASPOF 2.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene115558 SustainPine v3.0 166
AutoFact: RVT_1 domain containing protein 2.0e-05
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene131398 SustainPine v3.0 399
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 1.0e-17
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene139412 SustainPine v3.0 422
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 3.0e-32
FL-Next: tr=Integrase; subsp. trichocarpa). 0.0
Sma3: Integrase 3.394e-07
Internal
sp_v3.0_unigene148136 SustainPine v3.0 161
AutoFact: gag/pol polyprotein [Pisum sativum] 6.0e-09
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene161052 SustainPine v3.0 424
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 2.0e-35
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase family protein 8.897e-07
C-terminus
sp_v3.0_unigene163036 SustainPine v3.0 367
AutoFact: Retrotransposon protein, putative, unclassified n=16 Tax=Oryza RepID=Q2R0G5_ORYSJ 3.0e-20
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene163202 SustainPine v3.0 294
AutoFact: RVT_1 domain containing protein 4.0e-10
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
C-terminus
sp_v3.0_unigene163376 SustainPine v3.0 177
AutoFact: RVT_1 domain containing protein 0.0001
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene165134 SustainPine v3.0 200
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q56GE2_GINBI 8.0e-11
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene166802 SustainPine v3.0 379
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 2.0e-18
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
C-terminus
sp_v3.0_unigene199189 SustainPine v3.0 579
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 6.243e-09
Putative Complete
sp_v3.0_unigene201124 SustainPine v3.0 298
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q7XFT0_ORYSJ 5.0e-24
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain