Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1535 SustainPine v3.0 4578
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV38_VITVI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Complete
sp_v3.0_unigene46411 SustainPine v3.0 210
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 9.0e-31
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Podocarpus totara. Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 9.572e-33
Internal
sp_v3.0_unigene48468 SustainPine v3.0 565
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 7.331e-36
Putative Complete
sp_v3.0_unigene62960 SustainPine v3.0 228
• AutoFact: DNA-directed RNA polymerase D subunit 2a n=3 Tax=Arabidopsis RepID=RPD2A_ARATH 2.0e-13
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 4.708e-12
Internal
sp_v3.0_unigene64084 SustainPine v3.0 118
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IL57_POPTR 7.0e-07
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene69322 SustainPine v3.0 333
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 1.0e-26
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 7.418e-06
Internal
sp_v3.0_unigene74892 SustainPine v3.0 311
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 8.0e-30
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
Internal
sp_v3.0_unigene80757 SustainPine v3.0 186
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 3.0e-16
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 4.457e-06
Internal
sp_v3.0_unigene99374 SustainPine v3.0 440
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.16e-06
Internal
sp_v3.0_unigene101651 SustainPine v3.0 479
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 6.085e-25
C-terminus
sp_v3.0_unigene107823 SustainPine v3.0 402
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 1.371e-20
Internal
sp_v3.0_unigene112810 SustainPine v3.0 331
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1L6V6_SOLLC 4.0e-27
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 1.476e-08
Internal
sp_v3.0_unigene114970 SustainPine v3.0 626
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene165202 SustainPine v3.0 160
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 3.0e-18
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: DNA-directed RNA polymerase 7.894e-26
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain