Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: predicted protein [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2465 SustainPine v3.0 1573
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene18105 SustainPine v3.0 1486
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 8.661e-19
Complete
sp_v3.0_unigene18431 SustainPine v3.0 1621
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 8.661e-19
Complete
sp_v3.0_unigene20319 SustainPine v3.0 1316
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 7.168e-19
Complete
sp_v3.0_unigene24758 SustainPine v3.0 1602
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 8.661e-19
Complete
sp_v3.0_unigene37717 SustainPine v3.0 480
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 3.719e-15
Misassembled
sp_v3.0_unigene77295 SustainPine v3.0 441
AutoFact: likely cytosolic ribosomal acidic protein P0 [Candida albicans SC5314] ref|XP_888730.1| hypothetical protein CaO19_7015 [Candida albicans SC5314] gb|EAL01462.1| likely cytosolic ribosomal acidic protein P0 [Candida albicans SC5314] dbj|BAE44627.1| hypothe 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 3.156e-19
Internal
sp_v3.0_unigene79320 SustainPine v3.0 416
AutoFact: 60S acidic ribosomal protein P0 [Lodderomyces elongisporus NRRL YB-4239] gb|EDK47264.1| 60S acidic ribosomal protein P0 [Lodderomyces elongisporus NRRL YB-4239] 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 1.279e-07
C-terminus
sp_v3.0_unigene115921 SustainPine v3.0 551
AutoFact: 60S acidic ribosomal protein P0 n=1 Tax=Postia placenta Mad-698-R RepID=B8NZ89_POSPM 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 2.689e-19
N-terminus
sp_v3.0_unigene140866 SustainPine v3.0 612
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 9.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 1.039e-19
N-terminus
sp_v3.0_unigene142277 SustainPine v3.0 1144
AutoFact: 60S acidic ribosomal protein P0 n=4 Tax=Papilionoideae RepID=RLA0_SOYBN 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 4.646e-19
Misassembled
sp_v3.0_unigene150521 SustainPine v3.0 359
AutoFact: 60S acidic ribosomal protein, putative n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=E6RA36_CRYGW 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene150690 SustainPine v3.0 425
AutoFact: Ribosomal protein LP0-like protein (Fragment) n=1 Tax=Epinephelus coioides RepID=B5T1M1_EPICO 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 2.788e-19
Internal
sp_v3.0_unigene152853 SustainPine v3.0 333
AutoFact: Ribosomal protein L10 n=1 Tax=Elaeis guineensis RepID=B3TLL9_ELAGV 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene154859 SustainPine v3.0 477
AutoFact: L10e/P0 n=1 Tax=Suberites domuncula RepID=Q4KTH7_SUBDO 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene156927 SustainPine v3.0 352
AutoFact: 60S acidic ribosomal protein P0 n=3 Tax=Ajellomyces dermatitidis RepID=C5GCV5_AJEDR 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 8.379e-09
Putative N-terminus
sp_v3.0_unigene157848 SustainPine v3.0 462
AutoFact: 60S acidic ribosomal protein P0 n=14 Tax=Schizophora RepID=RLA0_DROME 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 3.156e-19
Internal
sp_v3.0_unigene192071 SustainPine v3.0 437
AutoFact: 60S acidic ribosomal protein P0 n=1 Tax=Dictyostelium purpureum RepID=F0ZXE3_DICPU 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 2.941e-19
Internal
sp_v3.0_unigene200559 SustainPine v3.0 363
AutoFact: 60S acidic ribosomal protein P0 n=9 Tax=Endopterygota RepID=E2AZT8_9HYME 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 5.172e-08
Putative N-terminus
sp_v3.0_unigene205691 SustainPine v3.0 508
AutoFact: 60S acidic ribosomal protein P0 n=6 Tax=Andropogoneae RepID=RLA0_MAIZE 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 4.82e-16
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain