Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: predicted protein [Populus trichocarpa]

Source: Ref_annotation from RefSeq

Species: Populus trichocarpa

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene42930 SustainPine v3.0 378
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RW52_RICCO 7.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene44296 SustainPine v3.0 1242
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710 gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana] gb|AEE35500.1| 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene45416 SustainPine v3.0 201
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LS88.1|PP250_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g23020 dbj|BAB02093.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76706.1| pentatricopeptide 2.0e-07
• FL-Next: sp=Pentatricopeptide repeat-containing protein At3g23020; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene47506 SustainPine v3.0 311
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RTG3_RICCO 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene48964 SustainPine v3.0 253
• AutoFact: pfam12854, PPR_1, PPR repeat 7.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene61623 SustainPine v3.0 176
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LS88.1|PP250_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g23020 dbj|BAB02093.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76706.1| pentatricopeptide 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene109054 SustainPine v3.0 371
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RW52_RICCO 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene113710 SustainPine v3.0 434
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LS88.1|PP250_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g23020 dbj|BAB02093.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76706.1| pentatricopeptide 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene131531 SustainPine v3.0 385
• AutoFact: pfam01535, PPR, PPR repeat 7.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene148117 SustainPine v3.0 225
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RW52_RICCO 8.0e-19
• FL-Next: sp=Pentatricopeptide repeat-containing protein At3g23020; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene160412 SustainPine v3.0 392
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710 gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana] gb|AEE35500.1| 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain