Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding protein 45A [Arabidopsis thaliana]

Source: Ref_annotation from RefSeq

Species: Arabidopsis thaliana


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1523 SustainPine v3.0 1639
AutoFact: RNA-binding protein 45A [Arabidopsis thaliana] gb|AAG40335.1|AF324983_1 AT5g54900 [Arabidopsis thaliana] gb|ABL66801.1| At5g54900 [Arabidopsis thaliana] gb|AED96554.1| RNA-binding protein 45A [Arabidopsis thaliana] 0.0
FL-Next: sp=Polyadenylate-binding protein RBP45A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nuclear acid binding protein, putative 9.787e-23
Complete
sp_v3.0_unigene12172 SustainPine v3.0 704
AutoFact: Putative DNA binding protein (Fragment) n=1 Tax=Trifolium pratense RepID=Q2PEV8_TRIPR 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear acid binding protein, putative 4.798e-19
C-terminus
sp_v3.0_unigene37871 SustainPine v3.0 1715
AutoFact: putative RNA binding protein [Oryza sativa Japonica Group] gb|ABF97192.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] dbj|BAG95141.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear acid binding protein, putative 9.524e-23
Complete
sp_v3.0_unigene53639 SustainPine v3.0 421
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene55336 SustainPine v3.0 379
AutoFact: mRNA binding post-transcriptional regulator (Csx1) [Aspergillus fumigatus Af293] gb|EAL84671.1| mRNA binding post-transcriptional regulator (Csx1), putative [Aspergillus fumigatus Af293] gb|EDP48168.1| mRNA binding post-transcriptional regulator (Csx1), p 5.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene65472 SustainPine v3.0 333
AutoFact: putative RNA Binding Protein 45 [Oryza sativa Japonica Group] dbj|BAD05783.1| putative RNA Binding Protein 45 [Oryza sativa Japonica Group] 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear acid binding protein, putative 3.755e-23
Internal
sp_v3.0_unigene133626 SustainPine v3.0 441
AutoFact: putative RNA Binding Protein 45 [Oryza sativa Japonica Group] dbj|BAD05783.1| putative RNA Binding Protein 45 [Oryza sativa Japonica Group] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear acid binding protein, putative 6.794e-23
Internal
sp_v3.0_unigene202139 SustainPine v3.0 993
AutoFact: Os03g0569900 protein (Fragment) n=5 Tax=Oryza sativa RepID=Q0DQQ8_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear acid binding protein, putative 1.212e-22
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain