Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: coatomer subunit alpha-1 [Arabidopsis thaliana]

Source: Ref_annotation from RefSeq

Species: Arabidopsis thaliana


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene5561 SustainPine v3.0 4957
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 0.0
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome undetermined scaffold_840, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene19391 SustainPine v3.0 478
AutoFact: Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA 4.0e-20
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene37027 SustainPine v3.0 878
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Coatomer subunit alpha-2 2.516e-08
Putative N-terminus
sp_v3.0_unigene40864 SustainPine v3.0 411
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 5.0e-18
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene50195 SustainPine v3.0 434
AutoFact: Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA 1.0e-24
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Coatomer alpha subunit, putative 4.17e-09
C-terminus
sp_v3.0_unigene60475 SustainPine v3.0 456
AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 1.0e-14
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Coatomer subunit alpha-2 2.364e-08
N-terminus
sp_v3.0_unigene60782 SustainPine v3.0 223
AutoFact: Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA 8.0e-09
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene63898 SustainPine v3.0 179
AutoFact: Alpha-COP n=1 Tax=Chlamydomonas reinhardtii RepID=A8HRR9_CHLRE 1.0e-26
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Coatomer subunit alpha-2 2.364e-08
Putative N-terminus
sp_v3.0_unigene63912 SustainPine v3.0 136
AutoFact: Vesicle coat complex COPI, alpha subunit n=1 Tax=Ectocarpus siliculosus RepID=D8LL95_ECTSI 2.0e-17
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Coatomer subunit alpha-2 2.364e-08
Internal
sp_v3.0_unigene69775 SustainPine v3.0 199
AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 3.0e-26
FL-Next: sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Coatomer subunit alpha-2 2.364e-08
Internal
sp_v3.0_unigene75171 SustainPine v3.0 307
AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Coatomer subunit alpha-2 2.364e-08
Internal
sp_v3.0_unigene80668 SustainPine v3.0 139
AutoFact: Coatomer protein complex n=1 Tax=Micromonas sp. RCC299 RepID=C1E4N8_MICSR 1.0e-15
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Coatomer subunit alpha-2 2.364e-08
N-terminus
sp_v3.0_unigene127041 SustainPine v3.0 1052
AutoFact: Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA 6.0e-23
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene185665 SustainPine v3.0 261
AutoFact: Coatomer alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9SU35_RICCO 4.0e-08
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene196224 SustainPine v3.0 546
AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 4.0e-10
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Coatomer subunit alpha-2 1.803e-08
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain