Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]

Source: Ref_annotation from RefSeq

Species: Arabidopsis thaliana

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene11836 SustainPine v3.0 1435
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene17798 SustainPine v3.0 1393
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Chlorophyll a/b-binding protein 0.0
Misassembled
sp_v3.0_unigene21382 SustainPine v3.0 983
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 5.593e-32
Complete
sp_v3.0_unigene21573 SustainPine v3.0 1325
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.201e-28
Complete
sp_v3.0_unigene22121 SustainPine v3.0 1184
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Chlorophyll a/b-binding protein 0.0
Complete
sp_v3.0_unigene33050 SustainPine v3.0 573
• AutoFact: chlorophyll a/b-binding protein [Pinus thunbergii] 4.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.205e-18
Internal
sp_v3.0_unigene34658 SustainPine v3.0 1487
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Chlorophyll a/b-binding protein 0.0
Misassembled
sp_v3.0_unigene51402 SustainPine v3.0 476
• AutoFact: Chlorophyll a-b binding protein 4, chloroplastic n=2 Tax=core eudicotyledons RepID=CB24_SOLLC 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 5.572e-24
C-terminus
sp_v3.0_unigene54909 SustainPine v3.0 379
• AutoFact: Chlorophyll a-b binding protein 151, chloroplastic n=18 Tax=Magnoliophyta RepID=CB21_GOSHI 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 2.01e-16
C-terminus
sp_v3.0_unigene56052 SustainPine v3.0 487
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 2.533e-16
C-terminus
sp_v3.0_unigene57060 SustainPine v3.0 411
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.356e-18
Putative Complete
sp_v3.0_unigene71907 SustainPine v3.0 376
• AutoFact: Chlorophyll a-b binding protein 3C, chloroplastic n=40 Tax=Magnoliophyta RepID=CB2G_SOLLC 0.0
• FL-Next: tr=Light-harvesting chlorophyll a/b-binding protein of photosystem II; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: LHCP 2.645e-19
Internal
sp_v3.0_unigene71937 SustainPine v3.0 416
• AutoFact: Putative chloroplast chlorophyll A-B binding protein type II (Fragment) n=2 Tax=Andropogoneae RepID=Q0H633_SORBI 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.917e-16
C-terminus
sp_v3.0_unigene73477 SustainPine v3.0 439
• AutoFact: Chlorophyll a-b binding protein type 2 member 2 (Fragment) n=5 Tax=Coniferales RepID=CB22_PINSY 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 3.607e-29
C-terminus
sp_v3.0_unigene73942 SustainPine v3.0 438
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 4.655e-24
Putative Complete
sp_v3.0_unigene79067 SustainPine v3.0 414
• AutoFact: Chlorophyll a-b binding protein 151, chloroplastic n=18 Tax=Magnoliophyta RepID=CB21_GOSHI 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.917e-16
C-terminus
sp_v3.0_unigene80558 SustainPine v3.0 215
• AutoFact: Chlorophyll a-b binding protein 151, chloroplastic n=18 Tax=Magnoliophyta RepID=CB21_GOSHI 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.618e-21
Putative C-terminus
sp_v3.0_unigene80694 SustainPine v3.0 193
• AutoFact: chlorophyll a/b-binding protein [Mesembryanthemum crystallinum] 1.0e-20
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.191e-18
Internal
sp_v3.0_unigene81681 SustainPine v3.0 408
• AutoFact: Chlorophyll a-b binding protein 4, chloroplastic n=2 Tax=core eudicotyledons RepID=CB24_SOLLC 3.0e-29
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 3.328e-14
Internal
sp_v3.0_unigene126645 SustainPine v3.0 1684
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Chlorophyll a/b-binding protein 0.0
Misassembled

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain