Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana]

Source: Ref_annotation from RefSeq

Species: Arabidopsis thaliana

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene6339 SustainPine v3.0 1751
• AutoFact: pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana] gb|AAC64217.2| Expressed protein [Arabidopsis thaliana] gb|AAM15083.1| Expressed protein [Arabidopsis thaliana] gb|AAM20452.1| unknown protein [Arabidopsis thaliana] gb|AAM91242.1| unknown protein [Arab 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative Complete
sp_v3.0_unigene72516 SustainPine v3.0 133
• AutoFact: Pre-mRNA-splicing factor syf2, putative n=1 Tax=Ricinus communis RepID=B9S5M2_RICCO 2.0e-10
• FL-Next: tr=Pre-mRNA-splicing factor syf2, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Putative uncharacterized protein At2g16860 7.797e-06
N-terminus
sp_v3.0_unigene78311 SustainPine v3.0 361
• AutoFact: Pre-mRNA-splicing factor SYF2 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8P0J3_COPC7 3.0e-38
• FL-Next: tr=Putative uncharacterized protein; Volvox carteri (Green alga). 0.0
C-terminus
sp_v3.0_unigene81807 SustainPine v3.0 221
• AutoFact: Pre-mRNA-splicing factor syf2 (Fragment) n=1 Tax=Camellia sinensis RepID=F4YFJ8_CAMSI 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Putative N-terminus
sp_v3.0_unigene129253 SustainPine v3.0 730
• AutoFact: Pre-mRNA-splicing factor syf2 (Fragment) n=1 Tax=Camellia sinensis RepID=F4YFJ8_CAMSI 8.0e-35
• FL-Next: tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene138322 SustainPine v3.0 327
• AutoFact: pfam08231, SYF2, SYF2 splicing factor 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene153408 SustainPine v3.0 352
• AutoFact: pfam08231, SYF2, SYF2 splicing factor 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; (Phytophthora megasperma f. sp. glycines). 0.0
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain