Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Elongation factor 1-alpha [Arabidopsis thaliana]

Source: Ref_annotation from RefSeq

Species: Arabidopsis thaliana

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene126973 SustainPine v3.0 950
• AutoFact: translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92326.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92327.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menzi 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Putative Complete
sp_v3.0_unigene127544 SustainPine v3.0 580
• AutoFact: translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92326.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92327.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menzi 9.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Putative Complete
sp_v3.0_unigene129258 SustainPine v3.0 675
• AutoFact: Elongation factor 1-alpha n=1 Tax=Arabidopsis thaliana RepID=F4HUA0_ARATH 4.2039e-45
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 2.814e-09
Putative C-terminus
sp_v3.0_unigene141314 SustainPine v3.0 395
• AutoFact: Putative elongation factor 1A (Fragment) n=1 Tax=Cupressus sempervirens RepID=B1PID4_9CONI 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
C-terminus
sp_v3.0_unigene145928 SustainPine v3.0 671
• AutoFact: Elongation factor 1-alpha n=1 Tax=Arabidopsis thaliana RepID=F4HUA0_ARATH 0.0
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 4.14644e-42
Internal
sp_v3.0_unigene146071 SustainPine v3.0 698
• AutoFact: Elongation factor 1-alpha (Fragment) n=1 Tax=Citrus trifoliata RepID=Q8GUS5_PONTR 6.0e-34
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 1.4013e-45
Internal
sp_v3.0_unigene146097 SustainPine v3.0 320
• AutoFact: Elongation factor 1-alpha n=1 Tax=Arabidopsis thaliana RepID=F4HUA0_ARATH 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
C-terminus
sp_v3.0_unigene146243 SustainPine v3.0 288
• AutoFact: Elongation factor 1-alpha n=1 Tax=Capsicum annuum RepID=Q9M516_CAPAN 3.0e-30
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 2.509e-29
Misassembled
sp_v3.0_unigene146301 SustainPine v3.0 634
• AutoFact: Putative elongation factor 1A (Fragment) n=1 Tax=Cupressus sempervirens RepID=B1PID4_9CONI 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Complete
sp_v3.0_unigene146401 SustainPine v3.0 575
• AutoFact: elongation factor 1 alpha [Saccharum hybrid cultivar CP65-357] 0.0
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Translation elongation factor-like protein 0.0
N-terminus
sp_v3.0_unigene150510 SustainPine v3.0 197
• AutoFact: Elongation factor 1-alpha (Fragment) n=2 Tax=Eukaryota RepID=Q2TTF2_9EUKA 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Internal
sp_v3.0_unigene150568 SustainPine v3.0 530
• AutoFact: Elongation factor 1-alpha n=21 Tax=Branchiopoda RepID=EF1A_ARTSA 0.0
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Putative N-terminus
sp_v3.0_unigene152027 SustainPine v3.0 433
• AutoFact: Elongation factor 1-alpha n=1 Tax=Trypanosoma brucei gambiense DAL972 RepID=D0A1M9_TRYB9 7.00649e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
C-terminus
sp_v3.0_unigene152867 SustainPine v3.0 406
• AutoFact: Elongation factor 1-alpha n=1 Tax=Strongyloides stercoralis RepID=B5RI03_9BILA 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
C-terminus
sp_v3.0_unigene157170 SustainPine v3.0 356
• AutoFact: Elongation factor 1 alpha (Fragment) n=1 Tax=Cyclotella cryptica RepID=Q5EVA4_9STRA 1.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Putative Complete
sp_v3.0_unigene157739 SustainPine v3.0 429
• AutoFact: Elongation factor 1-alpha (Fragment) n=1 Tax=Euplatypus parallelus RepID=Q967Q5_9CUCU 0.0
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 2.012e-34
Internal
sp_v3.0_unigene158101 SustainPine v3.0 267
• AutoFact: elongation factor 1 alpha long form [Monosiga brevicollis] 8.0e-38
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Translation elongation factor-like protein 0.0
Internal
sp_v3.0_unigene186107 SustainPine v3.0 488
• AutoFact: Elongation factor 1-alpha n=1 Tax=Solea senegalensis RepID=A6BMG3_SOLSE 4.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
C-terminus
sp_v3.0_unigene188027 SustainPine v3.0 424
• AutoFact: Putative elongation factor 1-alpha (Fragment) n=1 Tax=Prunus dulcis RepID=A7Y7K1_PRUDU 2.0e-24
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
N-terminus
sp_v3.0_unigene188736 SustainPine v3.0 406
• AutoFact: Elongation factor 1-alpha (Fragment) n=2 Tax=Eukaryota RepID=Q2TTF2_9EUKA 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Putative C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain