Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: 60S ribosomal protein L40-2 [Arabidopsis thaliana]

Source: Ref_annotation from RefSeq

Species: Arabidopsis thaliana


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene142672 SustainPine v3.0 454
AutoFact: 60S ribosomal protein L40 n=1 Tax=Puccinia graminis f. sp. tritici CRL 75-36-700-3 RepID=E3KFB8_PUCGT 5.0e-16
FL-Next: sp=Ubiquitin; Avena sativa (Oat). 0.0
Complete
sp_v3.0_unigene144688 SustainPine v3.0 475
AutoFact: [O] COG5272 Ubiquitin 6.0e-36
FL-Next: sp=Ubiquitin; Avena sativa (Oat). 0.0
Complete
sp_v3.0_unigene145150 SustainPine v3.0 926
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin fusion protein 0.0
Complete
sp_v3.0_unigene147258 SustainPine v3.0 272
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene147562 SustainPine v3.0 210
AutoFact: ubiquitin [Aspergillus clavatus NRRL 1] gb|EAW09700.1| ubiquitin [Aspergillus clavatus NRRL 1] 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene147587 SustainPine v3.0 355
AutoFact: ubiquitin [Aspergillus clavatus NRRL 1] gb|EAW09700.1| ubiquitin [Aspergillus clavatus NRRL 1] 5.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene147597 SustainPine v3.0 441
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_36.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CU91_VITVI 1.0e-30
FL-Next: sp=Ubiquitin; Avena sativa (Oat). 0.0
Complete
sp_v3.0_unigene147643 SustainPine v3.0 509
AutoFact: 60S ribosomal protein L40 n=1 Tax=Puccinia graminis f. sp. tritici CRL 75-36-700-3 RepID=E3KFB8_PUCGT 2.0e-36
FL-Next: tr=Ubiquitin; Morus bombycis. 0.0
Complete
sp_v3.0_unigene148448 SustainPine v3.0 288
AutoFact: ubiquitin extension protein [Capsicum annuum] 4.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene149288 SustainPine v3.0 134
AutoFact: ubiquitin C variant [Homo sapiens] 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene150597 SustainPine v3.0 144
AutoFact: Ubiquitin family n=1 Tax=Ruminococcus albus 8 RepID=E9S7A1_RUMAL 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative polyubiquitin 5.096e-06
Internal
sp_v3.0_unigene151399 SustainPine v3.0 472
AutoFact: Ubiquitin-60S ribosomal protein L40 n=93 Tax=Eukaryota RepID=RL40_DROME 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin fusion protein, putative, expressed 0.0
Complete
sp_v3.0_unigene151433 SustainPine v3.0 426
AutoFact: Ubiquitin n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SFI2_PARBP 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin fusion protein, putative, expressed 0.0
Complete
sp_v3.0_unigene151862 SustainPine v3.0 225
AutoFact: Ubiquitin extension protein putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WK76_9STRA 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene152052 SustainPine v3.0 232
AutoFact: Ubiquitin UbiA, putative n=2 Tax=Aspergillus fumigatus RepID=A4D9S6_ASPFU 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin 3.843e-10
C-terminus
sp_v3.0_unigene153036 SustainPine v3.0 348
AutoFact: PREDICTED: ubiquitin-like, partial n=1 Tax=Callithrix jacchus RepID=UPI0001D37F0D 4.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene153797 SustainPine v3.0 507
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin fusion protein, putative, expressed 0.0
Complete
sp_v3.0_unigene154776 SustainPine v3.0 117
AutoFact: ubiquitin C variant [Homo sapiens] 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene154895 SustainPine v3.0 402
AutoFact: Ubiquitin-60S ribosomal protein L40 n=93 Tax=Eukaryota RepID=RL40_DROME 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin 1.455e-11
C-terminus
sp_v3.0_unigene154929 SustainPine v3.0 425
AutoFact: ubiquitin fusion protein [Sclerotinia sclerotiorum 1980] gb|EDN96945.1| ubiquitin fusion protein [Sclerotinia sclerotiorum 1980 UF-70] 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin 2.665e-09
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain