Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ORF170 Reverse transcriptase (RNA-dependent DNA polymerase) chrM:228573-229085 REVERSE LENGTH=170

Source: Ref_annotation from ATG

Species: Arabidoptis thaliana

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene51841 SustainPine v3.0 240
• AutoFact: RVT_2 domain containing protein 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 9.67e-13
Putative N-terminus
sp_v3.0_unigene54573 SustainPine v3.0 154
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QVQ3_ORYSJ 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene55701 SustainPine v3.0 458
• AutoFact: RVT_2 domain containing protein 3.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene76191 SustainPine v3.0 365
• AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR 3.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.149e-32
N-terminus
sp_v3.0_unigene97110 SustainPine v3.0 410
• AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 4.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene102759 SustainPine v3.0 679
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2R459_ORYSJ 3.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.384e-18
N-terminus
sp_v3.0_unigene105051 SustainPine v3.0 458
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=6 Tax=Oryza sativa Japonica Group RepID=Q10JJ3_ORYSJ 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
N-terminus
sp_v3.0_unigene122684 SustainPine v3.0 427
• AutoFact: PREDICTED: similar to pol polyprotein, partial n=1 Tax=Nasonia vitripennis RepID=UPI00015B4525 7.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene123108 SustainPine v3.0 331
• AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene148476 SustainPine v3.0 294
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q33BC8_ORYSJ 6.0e-11
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00820; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene161032 SustainPine v3.0 380
• AutoFact: PREDICTED: similar to pol polyprotein, partial n=1 Tax=Nasonia vitripennis RepID=UPI00015B4525 4.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene161746 SustainPine v3.0 282
• AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR 3.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene164099 SustainPine v3.0 311
• AutoFact: Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA 5.0e-30
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.642e-35
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain