Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 nuclear RNA polymerase D1B chr2:16715089-16723406 FORWARD LENGTH=1976

Source: Ref_annotation from ATG

Species: Arabidoptis thaliana


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene16572 SustainPine v3.0 529
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 1.0e-26
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene34378 SustainPine v3.0 577
AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GWX9_POPTR 5.0e-19
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene48105 SustainPine v3.0 236
AutoFact: RNA polymerase IV largest subunit [Arabidopsis thaliana] 8.0e-14
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene50815 SustainPine v3.0 160
AutoFact: DNA-directed RNA polymerase n=2 Tax=Oryza sativa Japonica Group RepID=B9F2S6_ORYSJ 2.0e-11
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA polymerase IV subunit 2.274e-09
Internal
sp_v3.0_unigene55088 SustainPine v3.0 220
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7UBN7_VITVI 1.0e-14
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA polymerase IV subunit 2.438e-09
Internal
sp_v3.0_unigene97456 SustainPine v3.0 588
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 5.0e-25
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene105032 SustainPine v3.0 422
AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GM06_POPTR 2.0e-29
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase 1.94e-11
Internal
sp_v3.0_unigene132901 SustainPine v3.0 473
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7UBN7_VITVI 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain