Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RDR1, ATRDRP1 RNA-dependent RNA polymerase 1 chr1:5094317-5097817 REVERSE LENGTH=1107

Source: Ref_annotation from ATG

Species: Arabidoptis thaliana

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene7704 SustainPine v3.0 2056
• AutoFact: RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum RepID=Q6L3W8_SOLDE 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA-directed RNA polymerase 3.154e-20
C-terminus
sp_v3.0_unigene13534 SustainPine v3.0 471
• AutoFact: RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI 3.9937e-43
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Rna-dependent RNA polymerase 1.429e-19
Internal
sp_v3.0_unigene29189 SustainPine v3.0 634
• AutoFact: RNA-dependent RNA polymerase 1 [Arabidopsis thaliana] 9.0e-28
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene46322 SustainPine v3.0 299
• AutoFact: RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY 2.0e-22
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-directed RNA polymerase, putative 8.691e-17
Internal
sp_v3.0_unigene53295 SustainPine v3.0 477
• AutoFact: RNA-dependent RNA polymerase n=5 Tax=Andropogoneae RepID=Q19VG2_MAIZE 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Rna-dependent RNA polymerase 1.599e-23
Internal
sp_v3.0_unigene55991 SustainPine v3.0 230
• AutoFact: RNA-directed RNA polymerase n=6 Tax=Solanum RepID=Q9ZR58_SOLLC 6.0e-09
• FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-directed RNA polymerase, putative 1.017e-17
Internal
sp_v3.0_unigene57703 SustainPine v3.0 384
• AutoFact: RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata RepID=Q75ZN6_VIGUN 5.0e-16
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene67481 SustainPine v3.0 181
• AutoFact: RNA-directed RNA polymerase, putative n=1 Tax=Solanum tuberosum RepID=Q0KIK9_SOLTU 1.0e-08
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene72457 SustainPine v3.0 198
• AutoFact: RNA-dependent RNA polymerase 1a n=1 Tax=Cucumis sativus RepID=E9NWK6_CUCSA 8.0e-09
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene93988 SustainPine v3.0 403
• AutoFact: RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY 3.0e-39
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Rna-dependent RNA polymerase 2.608e-23
Internal
sp_v3.0_unigene96426 SustainPine v3.0 523
• AutoFact: RNA-directed RNA polymerase n=6 Tax=Solanum RepID=Q9ZR58_SOLLC 4.0e-35
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA-directed RNA polymerase, putative 1.437e-17
Internal
sp_v3.0_unigene106801 SustainPine v3.0 328
• AutoFact: RNA-directed RNA polymerase [Petunia x hybrida] 5.0e-32
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Rna-dependent RNA polymerase 1.769e-23
Internal
sp_v3.0_unigene108367 SustainPine v3.0 189
• AutoFact: RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI 3.0e-12
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene148529 SustainPine v3.0 248
• AutoFact: RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata RepID=Q75ZN6_VIGUN 3.0e-16
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene167117 SustainPine v3.0 290
• AutoFact: RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY 5.0e-26
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA-directed RNA polymerase, putative 6.56e-17
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain