Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding KH domain-containing protein chr3:4270423-4271070 FORWARD LENGTH=215

Source: Ref_annotation from ATG

Species: Arabidoptis thaliana

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene11490 SustainPine v3.0 1745
• AutoFact: putative partner of Nob1 [Oryza sativa Japonica Group] dbj|BAB90119.1| putative partner of Nob1 [Oryza sativa Japonica Group] gb|EEE55513.1| hypothetical protein OsJ_03725 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene131823 SustainPine v3.0 351
• AutoFact: putative partner of Nob1 [Oryza sativa Japonica Group] dbj|BAB90119.1| putative partner of Nob1 [Oryza sativa Japonica Group] gb|EEE55513.1| hypothetical protein OsJ_03725 [Oryza sativa Japonica Group] 7.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Partner of Nob1 1.355e-08
C-terminus
sp_v3.0_unigene154696 SustainPine v3.0 386
• AutoFact: PREDICTED: similar to putatative 28 kDa protein [Ornithorhynchus anatinus] 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene156400 SustainPine v3.0 446
• AutoFact: Pre-rRNA-processing protein PNO1 n=1 Tax=Phaeosphaeria nodorum SN15 RepID=PNO1_PHANO 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene156848 SustainPine v3.0 390
• AutoFact: [R] COG1094 Predicted RNA-binding protein (contains KH domains) 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Partner of Nob1 8.122e-09
N-terminus
sp_v3.0_unigene157708 SustainPine v3.0 371
• AutoFact: RNA-binding protein PNO1-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MTT7_PHYIT 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Partner of Nob1 1.355e-08
C-terminus
sp_v3.0_unigene192477 SustainPine v3.0 717
• AutoFact: RNA-binding protein PNO1-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MTT7_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Partner of Nob1 1.355e-08
Putative Complete
sp_v3.0_unigene200081 SustainPine v3.0 343
• AutoFact: [R] COG1094 Predicted RNA-binding protein (contains KH domains) 9.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain