Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROMIN chr3:8003999-8005452 FORWARD LENGTH=415

Source: Ref_annotation from ATG

Species: Arabidoptis thaliana

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene8277 SustainPine v3.0 2078
• AutoFact: RNA polymerase II assessory factor Cdc73p n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKF9_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene11496 SustainPine v3.0 2390
• AutoFact: RNA pol II accessory factor CDC73-like protein [Arabidopsis thaliana] dbj|BAB01474.1| unnamed protein product [Arabidopsis thaliana] gb|AAL38878.1| unknown protein [Arabidopsis thaliana] gb|AAN13180.1| unknown protein [Arabidopsis thaliana] gb|AEE76656.1| 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene24038 SustainPine v3.0 496
• AutoFact: RNA polymerase II assessory factor Cdc73p n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKF9_PHYPA 4.0e-30
• FL-Next: tr=RNA polymerase II assessory factor Cdc73p; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: RNA polymerase II assessory factor Cdc73p 8.285e-06
N-terminus
sp_v3.0_unigene55819 SustainPine v3.0 193
• AutoFact: RNA pol II accessory factor CDC73-like protein [Arabidopsis thaliana] dbj|BAB01474.1| unnamed protein product [Arabidopsis thaliana] gb|AAL38878.1| unknown protein [Arabidopsis thaliana] gb|AAN13180.1| unknown protein [Arabidopsis thaliana] gb|AEE76656.1| 3.0e-17
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Putative C-terminus
sp_v3.0_unigene63651 SustainPine v3.0 226
• AutoFact: PAF1 complex component n=1 Tax=Populus trichocarpa RepID=B9HUU3_POPTR 6.0e-15
• FL-Next: tr=PAF1 complex component; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene66972 SustainPine v3.0 288
• AutoFact: RNA pol II accessory factor CDC73-like protein [Arabidopsis thaliana] dbj|BAB01474.1| unnamed protein product [Arabidopsis thaliana] gb|AAL38878.1| unknown protein [Arabidopsis thaliana] gb|AAN13180.1| unknown protein [Arabidopsis thaliana] gb|AEE76656.1| 1.0e-12
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene71864 SustainPine v3.0 219
• AutoFact: RNA pol II accessory factor CDC73-like protein [Arabidopsis thaliana] dbj|BAB01474.1| unnamed protein product [Arabidopsis thaliana] gb|AAL38878.1| unknown protein [Arabidopsis thaliana] gb|AAN13180.1| unknown protein [Arabidopsis thaliana] gb|AEE76656.1| 4.0e-11
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
C-terminus
sp_v3.0_unigene97079 SustainPine v3.0 473
• AutoFact: RNA pol II accessory factor CDC73-like protein [Arabidopsis thaliana] dbj|BAB01474.1| unnamed protein product [Arabidopsis thaliana] gb|AAL38878.1| unknown protein [Arabidopsis thaliana] gb|AAN13180.1| unknown protein [Arabidopsis thaliana] gb|AEE76656.1| 8.0e-33
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
C-terminus
sp_v3.0_unigene99556 SustainPine v3.0 944
• AutoFact: PAF1 complex component n=1 Tax=Populus trichocarpa RepID=B9HUU3_POPTR 0.0
• FL-Next: tr=Parafibromin; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Putative C-terminus
sp_v3.0_unigene128266 SustainPine v3.0 545
• AutoFact: RNA pol II accessory factor CDC73-like protein [Arabidopsis thaliana] dbj|BAB01474.1| unnamed protein product [Arabidopsis thaliana] gb|AAL38878.1| unknown protein [Arabidopsis thaliana] gb|AAN13180.1| unknown protein [Arabidopsis thaliana] gb|AEE76656.1| 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: RNA polymerase II assessory factor Cdc73p 7.797e-06
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain