Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein S27a / Ubiquitin family protein chr1:8314940-8315410 FORWARD LENGTH=156

Source: Ref_annotation from ATG

Species: Arabidoptis thaliana


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene30834 SustainPine v3.0 577
AutoFact: Ubiquitin-40S ribosomal protein S27a n=60 Tax=Eumetazoa RepID=RS27A_DROME 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S27a 2.021e-06
Complete
sp_v3.0_unigene44242 SustainPine v3.0 540
AutoFact: Ubiquitin extension protein n=1 Tax=Capsicum annuum RepID=A0MKC8_CAPAN 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene57591 SustainPine v3.0 254
AutoFact: Ubiquitin extension protein n=1 Tax=Capsicum annuum RepID=A0MKC8_CAPAN 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene130706 SustainPine v3.0 418
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v3.0_unigene152263 SustainPine v3.0 373
AutoFact: ubiquitin/ribosomal protein L40 fusion protein [Dictyostelium discoideum AX4] sp|P14794.2|RL40_DICDI RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName: Full=Ubiquitin A-52 residue ribosomal protein fusion product 1; Contains: RecName: Full=Ubiqui 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene154789 SustainPine v3.0 351
AutoFact: Ribosomal protein S27a, component of cytosolic 80S ribosome and 40S small subunit [Ostreococcus lucimarinus CCE9901] gb|ABO96912.1| Ribosomal protein S27a, component of cytosolic 80S ribosome and 40S small subunit [Ostreococcus lucimarinus CCE9901] 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene155938 SustainPine v3.0 442
AutoFact: Ubiquitin/40S ribosomal protein S27a fusion protein n=1 Tax=Argas monolakensis RepID=Q09JW5_ARGMO 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene158220 SustainPine v3.0 246
AutoFact: 40S ribosomal protein S27A, putative n=1 Tax=Ixodes scapularis RepID=B7P0U0_IXOSC 6.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene203738 SustainPine v3.0 273
AutoFact: Ubiquitin, putative n=2 Tax=Eukaryota RepID=D0NEJ7_PHYIT 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain