Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: DEAD/DEAH box RNA helicase family protein chr5:3553334-3556646 FORWARD LENGTH=427

Source: Ref_annotation from ATG

Species: Arabidoptis thaliana

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene23664 SustainPine v3.0 3049
• AutoFact: RNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene34884 SustainPine v3.0 1869
• AutoFact: DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] ref|NP_568244.2| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana] sp|Q9LFN6.2|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56 sp|Q56XG6.3|RH15_ARATH RecName: Full=D 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene58786 SustainPine v3.0 413
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=2 Tax=Magnoliophyta RepID=B9TBR5_RICCO 1.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene74470 SustainPine v3.0 206
• AutoFact: DEAD-box ATP-dependent RNA helicase 56 n=2 Tax=Arabidopsis thaliana RepID=F4JWF6_ARATH 8.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene75455 SustainPine v3.0 187
• AutoFact: ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] gb|EAU92983.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene76434 SustainPine v3.0 359
• AutoFact: ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] gb|EAU92983.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene76787 SustainPine v3.0 261
• AutoFact: ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] gb|EAU92983.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130] 8.99999e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 56 6.042e-09
Internal
sp_v3.0_unigene78767 SustainPine v3.0 105
• AutoFact: DEAD-box ATP-dependent RNA helicase 56 n=2 Tax=Arabidopsis thaliana RepID=F4JWF6_ARATH 2.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene140586 SustainPine v3.0 578
• AutoFact: DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana] 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 56 9.077e-09
N-terminus
sp_v3.0_unigene150908 SustainPine v3.0 213
• AutoFact: ATP-dependent RNA helicase SUB2 n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=SUB2_CRYNB 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene154848 SustainPine v3.0 297
• AutoFact: HLA-B associated transcript 1 [Homo sapiens] emb|CAM25876.1| HLA-B associated transcript 1 [Homo sapiens] emb|CAO72085.1| HLA-B associated transcript 1 [Homo sapiens] emb|CAQ06507.1| HLA-B associated transcript 1 [Homo sapiens] emb|CAQ09976.1| HLA-B assoc 8.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 56 5.097e-09
Internal
sp_v3.0_unigene155381 SustainPine v3.0 359
• AutoFact: Dead box family RNA helicase n=1 Tax=Thalassiosira pseudonana RepID=B8LBP2_THAPS 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene157822 SustainPine v3.0 277
• AutoFact: PREDICTED: similar to nuclear RNA helicase Bat1 isoform 1 [Strongylocentrotus purpuratus] ref|XP_001178866.1| PREDICTED: similar to nuclear RNA helicase Bat1 [Strongylocentrotus purpuratus] ref|XP_001177126.1| PREDICTED: similar to nuclear RNA helicase Ba 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene158687 SustainPine v3.0 279
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 56 dbj|BAD88053.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica Group] dbj|BAG90417.1| unnamed protein product [Oryza sativa Japonica Group] gb|ACV83946.1| DExD box helicase protein HLA-B 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene159418 SustainPine v3.0 343
• AutoFact: ATP-dependent RNA helicase SUB2 n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=SUB2_CRYNB 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene163318 SustainPine v3.0 404
• AutoFact: DEAD-box ATP-dependent RNA helicase 56 n=2 Tax=Arabidopsis thaliana RepID=F4JWF6_ARATH 5.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain